Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4459g00007 ATGATTTCAAGGGCCAACTCTGGCTTCCAAAGTGTCCATCAAGGGCTTGAGATGTTTCCTGTCACTGAAGATATGGTGTCACAATCTGTGGAGGTAAACTCTGGCTCAGGTTCACCCTCTAGTTCCCTACTCTTCAATCTCTCTGTTCTCAAAGACAAGCTTCATCAGGTGCAGACCCTGGTTGGTGTTATTCTCTCCCCTGATCAAAGCCTACCCGAGTCAACTTCCATAGCCATATCAAGCATGAACTCAACAATCCAAGAAATCATAGTAACTGCCACTTCAATGATGTTCACCTGCCAACAGATGGCTCTCAGTTTCCCTCCAGGTACTACTACCACTTGCATCATCAACAATGAATTGCACCAGCAACAATCTCATCATCATGACAAGTTGCCACACTCAAATTTAGGCAATAATAGGGGTGTGCTTAGTAACATAGGCACAGATATTAGAGGTCAGAGTTTATTTTCTAGTACTGATTCAGAGGCATTGGATTGGTTTGGTGAAAGCTATAATAATAATAATAAAAATAATATTAGTTGTAATAGTAATATTAAATATAAGCTGAAGGATGATGATAGAAAAACCAATAAAAGTAGGGGAGGATTGTGTAAAGGGGATGAAACTAATGAAGGTTATAGAGGGATTTCACCAAAGAATTCAGATATAATTGAATTGGATGCTGAGGATTTGTTGGCAAAGTACACTCATTATTGTCAAGTATGTGGCAAAGGGTTTAAGCGTGATGCGAATTTGAGGATGCACATGAGAGCTCATGGGGATGAGTATAAGACTAGTGCTGCCTTGAGTAACCCAATCAAGAATAGAGGGAACTTAGATTGTTTGGTGAGTATGAAACCCAAGAAATATTCATGTCCCCAAGAAGGGTGTAGGTGGAACCAAAAGCATGCCAAGTTTCAGCCATTGAAGTCCATGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGCCCCAAAATGTACGTGTGCAAGAGGTGCAACCAGAAGCAGTTCTCGGTGCTTTCTGATCTGAGGACCCATGAGAAGCATTGTGGGGATCTCAAGTGGCAGTGCTCGTGTGGCACTACATTTTCCAGAAAAGACAAGCTTATGGGTCATGTTGGTTTGTTCGTTGGACACCACCCAGCTATCACTGGCTTATCATACTCAAGCAAATTAGAGCAGCAGCCATTGCAAATGCAGATCGATGGTAGTTCAACATGA 1227 0.4165 MISRANSGFQSVHQGLEMFPVTEDMVSQSVEVNSGSGSPSSSLLFNLSVLKDKLHQVQTLVGVILSPDQSLPESTSIAISSMNSTIQEIIVTATSMMFTCQQMALSFPPGTTTTCIINNELHQQQSHHHDKLPHSNLGNNRGVLSNIGTDIRGQSLFSSTDSEALDWFGESYNNNNKNNISCNSNIKYKLKDDDRKTNKSRGGLCKGDETNEGYRGISPKNSDIIELDAEDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPIKNRGNLDCLVSMKPKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVGLFVGHHPAITGLSYSSKLEQQPLQMQIDGSST 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4459g00007 408 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 34 387 IPR044300 GO:0010044|GO:0010447
Gabi4459g00007 408 Gene3D Classic Zinc Finger 327 376 - -
Gabi4459g00007 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 265 IPR013087 -
Gabi4459g00007 408 Gene3D Classic Zinc Finger 226 294 - -
Gabi4459g00007 408 FunFam Zinc finger protein 574 237 262 - -
Gabi4459g00007 408 SUPERFAMILY beta-beta-alpha zinc fingers 236 263 IPR036236 -
Gabi4459g00007 408 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Gabi4459g00007 408 SMART c2h2final6 291 324 IPR013087 -
Gabi4459g00007 408 SMART c2h2final6 238 260 IPR013087 -
Gabi4459g00007 408 SMART c2h2final6 329 351 IPR013087 -
Gabi4459g00007 408 MobiDBLite consensus disorder prediction 193 219 - -
Gabi4459g00007 408 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4459g00007 Gabi-Chr4459 83095 84321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4459g00007 40 384 C2H2 Transcription Factor Family AT5G22890 49.162 8.35e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4459g00007 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4459g00007 - - gmx:100802769 532.332