Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4459g00006 ATGTTGTCTGAAATGGACATGTCGTGTAATAACGACATCGCAAAGGGGAAGCGCACAAAGCGGCGTCTGAGGCCTTTGTCGCCTTGTGCCGTTGCTGCCATGACTTCTAGCTGCTCAAGTGCTTCCGGTGGCGGCGGCGGCGGCGACTATGGCTCGTTTTCATCCAACACCTTTGAGGAAGAAGAAGACATGGCTAATTGCTTGATTCTCCTTGCCCAAGGAAGAGGAAGAGAAAGAGAAAGAGAAAATCTTCATCATCATAAGCACCAAACTGAAGAAGATAAGACAACAGAGATTGGTACCAAAATTGGTTTCTATATTTATGAGTGCAAAACTTGCAACAGAACATTCCCTTCTTTTCAAGCACTGGGTGGTCACAGGGCAAGTCATAAGAAGCCAAAGTTGACGCCGCCGCCGGAGGAAAAGAAACCACCGCAACCGCCGCCGCTGGTGGTGCAACCAATCACGAGTTGTGAGTTTGAAGAAGCAAAGCCAACCCATGTGAAGATTAGCCCTTTGGTTTCCCTTCAGTTAGGGTGCGGTAATAGTAATAATAATAATAATAATAATAACAGAGGTAATTTCCATGGAAATCACAAGCCCAAGATTCATGAGTGTTCCATTTGTGGTTCTGAATTCACATCTGGACAAGCATTGGGTGGACATATGAGGAGGCACAGAGCATCTGCTCAGACAACTTGTGTGGAAATTAAGCCTCGGAATGTTCTAGATTTGGATCTTAACCTTCCGGCGCCGGAGGATGATCTCCGGGATTCGAAGTTTCAGTTTCCGGCGACCCAAAAATCTTTAGCGCTGTCTGCTGCTCCGGCTTTGGTGGGTTGCCATTATTAG 852 0.4683 MLSEMDMSCNNDIAKGKRTKRRLRPLSPCAVAAMTSSCSSASGGGGGGDYGSFSSNTFEEEEDMANCLILLAQGRGRERERENLHHHKHQTEEDKTTEIGTKIGFYIYECKTCNRTFPSFQALGGHRASHKKPKLTPPPEEKKPPQPPPLVVQPITSCEFEEAKPTHVKISPLVSLQLGCGNSNNNNNNNNRGNFHGNHKPKIHECSICGSEFTSGQALGGHMRRHRASAQTTCVEIKPRNVLDLDLNLPAPEDDLRDSKFQFPATQKSLALSAAPALVGCHY 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4459g00006 283 SMART c2h2final6 204 226 IPR013087 -
Gabi4459g00006 283 SMART c2h2final6 108 130 IPR013087 -
Gabi4459g00006 283 Gene3D Classic Zinc Finger 185 245 - -
Gabi4459g00006 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 231 IPR013087 -
Gabi4459g00006 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Gabi4459g00006 283 PANTHER ZINC FINGER PROTEIN ZAT5 57 266 - -
Gabi4459g00006 283 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Gabi4459g00006 283 Pfam C2H2-type zinc finger 108 133 - -
Gabi4459g00006 283 Pfam C2H2-type zinc finger 204 228 - -
Gabi4459g00006 283 SUPERFAMILY beta-beta-alpha zinc fingers 107 226 IPR036236 -
Gabi4459g00006 283 MobiDBLite consensus disorder prediction 124 152 - -
Gabi4459g00006 283 ProSitePatterns Zinc finger C2H2 type domain signature. 206 226 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4459g00006 Gabi-Chr4459 70310 71233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4459g00006 59 283 C2H2 Transcription Factor Family AT2G28200 43.825 3.06e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4459g00006 zf-C2H2_6 1.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4459g00006 - - gmx:100788646 305.449