Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4459g00003 ATGTACGCAATGGATGTTCACCACCAAGACACACAAGTGAACATGAATGATTTTGAGCTACACAACTTCATTGCCGATCCCAACTTTGATCATCAGTTTATCAATTTGATTCGAGGGGGCAATGAAAGTTCCATTTCTAACTTCAATTCTGACCTTATCAATGATTGCTTCGTTGATAATCAATATCCCCTTTCATGTCCTGGAAACCCTTTTGATCAAAACAGTAGTAATGCTGTGAGTGCCTATGATCCCAGCTCTACATTTAACTCCTTCTCATGTTTTGATGATGATGTTAAGGGAGAAGGAGAAGAAGAAGATGAAGAAGAAAATGATGAAGAGGATTCTTCTGCAACCACTACCACCACCACCACTACCACCACCACGGCAACTGGAACCGGTGGTGATGCCAAAACAAGGCTAAAATCTGATAGGGCCAAGACTCTCATTTCTGAGAGGAGGAGGAGAGGCCGAATGAAGGAGAAGCTTTATGCTTTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATAATTGGAGATGCAGTATCATACGTACATGAGCTTCAAGCACAAGCTAAGAAGCTGAAGGCTGAGGTTGCAGGACTTGAAGCATCCTTGTTAGTGTCCGAAAATTATCAAGAACCAACTAACAACCCCGTAAAGGTTCAAGTCACCCACAACAGGGCTCCAATCAGCAAGAAGATCATGCAGATGGACATGTTTCAAGTAGAGGAAAGAGGGTATTATGCCAAAATAGTGTGCAATAAAGGAGAAGGGGTAGCTGCCTCTCTATACGGTGCTCTTGAGTCTCTTGCAGGTTTCAATGTTCAGAATTCAAACTTGGTTACAGTTTGTGACAGTTTTCTACTTACGTTTACTTTGAATGTAAAAGGGTCTGAATCAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGGGGCTCTTCTGAACCAAGGCTTTGAATTCATGGCATCCTTTCATGTTTGA 999 0.4204 MYAMDVHHQDTQVNMNDFELHNFIADPNFDHQFINLIRGGNESSISNFNSDLINDCFVDNQYPLSCPGNPFDQNSSNAVSAYDPSSTFNSFSCFDDDVKGEGEEEDEEENDEEDSSATTTTTTTTTTTATGTGGDAKTRLKSDRAKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHELQAQAKKLKAEVAGLEASLLVSENYQEPTNNPVKVQVTHNRAPISKKIMQMDMFQVEERGYYAKIVCNKGEGVAASLYGALESLAGFNVQNSNLVTVCDSFLLTFTLNVKGSESEINLPNLKLWVTGALLNQGFEFMASFHV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4459g00003 332 MobiDBLite consensus disorder prediction 116 135 - -
Gabi4459g00003 332 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 138 208 - -
Gabi4459g00003 332 MobiDBLite consensus disorder prediction 93 145 - -
Gabi4459g00003 332 Coils Coil 188 208 - -
Gabi4459g00003 332 SMART finulus 148 197 IPR011598 GO:0046983
Gabi4459g00003 332 MobiDBLite consensus disorder prediction 98 115 - -
Gabi4459g00003 332 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 16 322 - -
Gabi4459g00003 332 Gene3D - 135 208 IPR036638 GO:0046983
Gabi4459g00003 332 CDD bHLH_AtFIT_like 141 216 - -
Gabi4459g00003 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Gabi4459g00003 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 212 IPR036638 GO:0046983
Gabi4459g00003 332 Pfam Helix-loop-helix DNA-binding domain 147 192 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4459g00003 Gabi-Chr4459 36540 38518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4459g00003 14 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 54.517 1.58e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4459g00003 HLH 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4459g00003 K26214 - gmx:100805451 428.328