Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4456g00011 ATGGATTCTTCCTCTGTAAGAAAGCCAAACGTACGAAAGGGAAAGGTTGAGATCAAGAAAGTGCAAGAAAAAAGCAAGCGATATGTGACCTTCTCAAAACGCAAACAAGGGCTTTTCAACAAAGTCACTGAGCTATCCCTTCTTTGCCAAGCTGAAACTGCTTTGATCATCAATTCTCAGAAAGGAAATTTCTATGCCTGCGGCTATCCTGATCCGGACTCTGTCATCCACCGCTACCACAGCGGCAGCGAAGGAGGAGGGTATCACAACCATGCTGCTAAAAGGAGGTTCCAAGAGGGAGTTGAAACCTTAAGGCTAAAATATGAGACAACTGAATCTAAGTTGAAAGAGGAGAATATGCATCAAGAAGAGATCACTGAGGCAAAAAAGAATGGTTTGTTATTCACTGAATGGTGGGATCGCTCCATTGAGGATATGAGTTTTGAACAAGTTGAGGAATTTAAGAATTGCATAGAAGATTTGAAGATGAAACTTGTTGCTGCAAGGGGAAAGAAGAAGAAGAAGAAGGTTGATAATTCACTTCCACCATTACCAGTTGCATCATCACCGATGCAAAGTTTATCAGATATTTCTTTCTTGAACGAGGGTTTTGATGGGTATGGTGCATGGAACTGTGGTGATTTTAGCCATTATTAA 657 0.411 MDSSSVRKPNVRKGKVEIKKVQEKSKRYVTFSKRKQGLFNKVTELSLLCQAETALIINSQKGNFYACGYPDPDSVIHRYHSGSEGGGYHNHAAKRRFQEGVETLRLKYETTESKLKEENMHQEEITEAKKNGLLFTEWWDRSIEDMSFEQVEEFKNCIEDLKMKLVAARGKKKKKKVDNSLPPLPVASSPMQSLSDISFLNEGFDGYGAWNCGDFSHY 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4456g00011 218 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Gabi4456g00011 218 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Gabi4456g00011 218 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Gabi4456g00011 218 SUPERFAMILY SRF-like 12 83 IPR036879 GO:0003677|GO:0046983
Gabi4456g00011 218 Gene3D - 23 105 IPR036879 GO:0003677|GO:0046983
Gabi4456g00011 218 PANTHER MADS BOX PROTEIN 13 165 - -
Gabi4456g00011 218 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Gabi4456g00011 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 66 IPR002100 GO:0003677|GO:0046983
Gabi4456g00011 218 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4456g00011 Gabi-Chr4456 74563 75219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4456g00011 13 172 Type I MADS-box Gene Family AT5G60440 31.288 7.75e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi4456g00011 SRF-TF 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4456g00011 - - gmx:100818284 164.851