Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4455g00074 ATGGTACAATCAAGGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCATGGGTATCCGAAATTCGCCACCCACTTCTGAAGAGAAGGGTGTGGCTAGGAACATTTGAAACAGCAGAAGAAGCAGCTCGAGCTTATGATCAAGCTGCAATTTTGATGAGTGGTCGAAATGCCAAAACCAATTTCCCAATAACTCAAACCCCAGAAGGTGACCCAAAGAGCAGTACCAGCGAGGACACACCCTCCTCCACCTCGAAGGATCTGGAAGAAATCCTACACGCAAAGCTTAGAAAATGTGGCAAGGTACCTTCCCCTTCCATGACATGTTTGAGGCTCGACACAGAGAACTCTCACATTGGTGTGTGGCAAAAGCGTGCTGGGCAGCGTTCTGATTCACACTGGGTGATGACTGTTCAGCTGGGAAAAAAGAGTACCAATGAGGCTGAAGATAATAATAGTTCCCTGCCTTCGTCTGTTGAGCAGTTCCCATCATCCACAGTAACTGGTCAAGAACTTGTGAGATCAGAGATTGATGAGGAGGACAGAATTGCCCTCCAAATGATAGAGGAACTCCTTATTAACGACAGGAGCTGTCCTAGCCCCTCATTTAACAATATACAACAAGGGGATGATGACAGCTTTTTTCTTTAA 651 0.4654 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSSTSEDTPSSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGQRSDSHWVMTVQLGKKSTNEAEDNNSSLPSSVEQFPSSTVTGQELVRSEIDEEDRIALQMIEELLINDRSCPSPSFNNIQQGDDDSFFL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4455g00074 216 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Gabi4455g00074 216 MobiDBLite consensus disorder prediction 144 169 - -
Gabi4455g00074 216 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Gabi4455g00074 216 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Gabi4455g00074 216 MobiDBLite consensus disorder prediction 60 82 - -
Gabi4455g00074 216 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Gabi4455g00074 216 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Gabi4455g00074 216 MobiDBLite consensus disorder prediction 60 86 - -
Gabi4455g00074 216 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Gabi4455g00074 216 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Gabi4455g00074 216 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Gabi4455g00074 216 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Gabi4455g00074 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4455g00074 Gabi-Chr4455 636132 637112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4455g00074 1 192 AP2-EREBP Transcription Factor Family AT1G15360 59.799 2.49e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi4455g00074 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4455g00074 - - gmx:100787517 343.199