Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4455g00068 ATGGATGCTATTGGTGCAACTATCACCTTCCTGCTGCTGTTCATGTCCTTGTCATCTGCTGGTACTAGAGCTGAAACACAACCACCAAAGAACATACCACCTGGTTCCTCACTTTTCCCTACTCACCCCCCCACTTCATGGCTTTCCCCTTCTGGTCTATTTGCATTTGGCTTTTATCGGCAAGACAATGGCTTTGTCGTCGGAATATGGTTGGTTGGCGTGGAGAACAACAATACAGTGGTGGTATGGACTGCAAACCGAGATGACCCTCCAGTCACCTCAAATGCAAAGCTACAACTAACCCTTGATGGTAAACTTGTAGTAGTAGAGCAAGGACAAGAGAAGCTTATTGCTAATGCTAATGCAACAGCTTCCTTTGCCTCCATGCTTGATTCTGGAAACTTGGTACTGTACAACAACGATTCCAGCATCATATGGCAGAGTTTTGATCACCCAACTGATACCATGTTAGGTGGTCAATCCCTACCTTGCGGAAGTCAACTGTTGTCTAATTCATCAGCAATCAACCCCTCAACTGGACGGTTTCTTCTCGTTATGCAGGGTGATGGAAATCTTGTTCTATATCCAGCAAACACAGCCAACACACCATGGGATGCTTACTGGGCCACTGGTATCGTTGGTTTCAAATATCATCTTTACCTCAACAAAACAGGTTCCCTTCAGATCAGAGATAGCAATAATTTGATCGTTAGATATTTGGCTGACAACATCAACAATGGGAACTCGACCATCTACCGTGCAACCCTCGATTTTGATGGGTTTTTTCGGCTGTATGAGCATGTTAACAAGGAAAGTGGCAAAAAAGTAAAAAAAAGTTGGCCGAGCGGCAATGCATGTGAAGTAAAGGGTCTTTGTGGCTTCAACAGCTTCTGCGCATTAGATGACAACACAGCAAAGTGTAATTGTCTTCGGGGTTTTGACTTCATAGATCCAAATAAAGAGACTCTTGGCTGCAAAAGGAGCTTTTCAAAAGCAGATTGTAGAGGTGAGAAAGATGGTGCAGCGTTTTATAACATGGTCTCGATGGAGAATATTAAATGGGGGGATAGTCCTTATTACGAGGCTGAAATGTCAGAGGAAGAAGAATGCTCCTATGCTTGTCTGGCTGATTGCAACTGTTGGGCTGCACTTTATGATGGCGGGAGTTGCAAGAAACACGGACTTCCTTTGAGATATGTCAGTAGGTCAATATATGAAGCTGAAACTCAGTCCTCCACTGTATTCTTAAAGGTGGGAAATGACATCCTCAGAAACTGGAAGGGGGATGACAAACCTGTTGCTGAACAACCACCTCTAATTAAGAGCGCAAGTAACAAAGCAATGGTGCATATTATTGTTGTTACATCGGTGTTTTCTGTGCTTTTGTGTTCAACTATTGCAATCTCCAGCCATTACATGTACAAGATTCGAGTATTAATGTACAAAAGGCTGATGGAGACTGGGAACATGGGCCTCAACGAAGAGTTGGCTCTGAGAAGATTTTCATACGGTGAGCTGAAAAGAGCGACAAATCATTTCAAACAAGAGTTGGGTAAGGGTTCTTTTGGAGCAGTTTACAAAGGGGCTTTGAACAAAGGCAGAAGATTGATTGCGGTTAAGAGGCTAGAGAAGTTAGTTGAAGAAGGAGAAAGGGAGTTTCAAGCAGAAATGCGAGCCATTGGAAAAACCCACCACAGGAACCTAGTTCGATTGCTGGGGTTTTGTGCTGAGGGTTCTAAAAGGCTTCTGGTTTATGAGTACATGAGGAATGGTTCCCTTGGAAATCTTATCTTTGGGGCTCAAAGAATTCCAGATTGGGATGAAAGAGTGAAAATAGCACTGGATGTTGCAAGAGGGATCCTCTATCTCCATGAAGAGTGTGAGGCACCAATCATTCATTGTGACATAAAGCCTCAAAATATTTTGATGGATGAGTTTTGGACTGCCAAGATATCTGATTTTGGGCTAGCAAAACTTCTAATGCCAGATCAAACCAGAACGTTCACAGGGGTTAGAGGGACAAGAGGGTACGTGGCCCCGGAATGGCACAAGAACACCCCAATATCAGTGAAGGTAGATGTCTATAGCTATGGAATAGTACTATTGGAAACTTTATGTTGCAGAAGAAACATTGAAGTTAATGTCTCGGAACCTGAGGAGGTCCTTCTGACCAGTTGGGCCTACAAGTGCTTTGTTGCCGGAGAGTTCAATAGGCTCGTTCTTTTGCAAGACGTGGATATAAATGTCCTGGAAAATATGGTTAAGGTGGCACTTTGGTGTATTAATGATGAACCTGTTCTCCGGCCAACAATGAAAAGTGTGTTGTTGATGTTAGAAGGGATTACCGATATAGCAATTCCTCCTTGTCCAAATTCTATTTCCATGTGA 2388 0.4326 MDAIGATITFLLLFMSLSSAGTRAETQPPKNIPPGSSLFPTHPPTSWLSPSGLFAFGFYRQDNGFVVGIWLVGVENNNTVVVWTANRDDPPVTSNAKLQLTLDGKLVVVEQGQEKLIANANATASFASMLDSGNLVLYNNDSSIIWQSFDHPTDTMLGGQSLPCGSQLLSNSSAINPSTGRFLLVMQGDGNLVLYPANTANTPWDAYWATGIVGFKYHLYLNKTGSLQIRDSNNLIVRYLADNINNGNSTIYRATLDFDGFFRLYEHVNKESGKKVKKSWPSGNACEVKGLCGFNSFCALDDNTAKCNCLRGFDFIDPNKETLGCKRSFSKADCRGEKDGAAFYNMVSMENIKWGDSPYYEAEMSEEEECSYACLADCNCWAALYDGGSCKKHGLPLRYVSRSIYEAETQSSTVFLKVGNDILRNWKGDDKPVAEQPPLIKSASNKAMVHIIVVTSVFSVLLCSTIAISSHYMYKIRVLMYKRLMETGNMGLNEELALRRFSYGELKRATNHFKQELGKGSFGAVYKGALNKGRRLIAVKRLEKLVEEGEREFQAEMRAIGKTHHRNLVRLLGFCAEGSKRLLVYEYMRNGSLGNLIFGAQRIPDWDERVKIALDVARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYVAPEWHKNTPISVKVDVYSYGIVLLETLCCRRNIEVNVSEPEEVLLTSWAYKCFVAGEFNRLVLLQDVDINVLENMVKVALWCINDEPVLRPTMKSVLLMLEGITDIAIPPCPNSISM 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4455g00068 795 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 786 - -
Gabi4455g00068 795 FunFam S-receptor-like serine/threonine-protein kinase 482 587 - -
Gabi4455g00068 795 ProSiteProfiles Bulb-type lectin domain profile. 153 277 IPR001480 -
Gabi4455g00068 795 Pfam Protein kinase domain 513 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4455g00068 795 Gene3D - 29 150 IPR036426 -
Gabi4455g00068 795 Pfam S-locus glycoprotein domain 246 314 IPR000858 GO:0048544
Gabi4455g00068 795 FunFam Serine/threonine-protein kinase 152 277 - -
Gabi4455g00068 795 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 44 791 - -
Gabi4455g00068 795 Pfam D-mannose binding lectin 81 162 IPR001480 -
Gabi4455g00068 795 PIRSF SRK 2 795 IPR024171 GO:0004674
Gabi4455g00068 795 SMART serkin_6 511 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4455g00068 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Gabi4455g00068 795 ProSiteProfiles Protein kinase domain profile. 511 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4455g00068 795 CDD B_lectin 48 152 IPR001480 -
Gabi4455g00068 795 Gene3D Transferase(Phosphotransferase) domain 1 588 785 - -
Gabi4455g00068 795 SUPERFAMILY alpha-D-mannose-specific plant lectins 176 267 IPR036426 -
Gabi4455g00068 795 ProSitePatterns Protein kinases ATP-binding region signature. 517 540 IPR017441 GO:0005524
Gabi4455g00068 795 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 170 IPR036426 -
Gabi4455g00068 795 Coils Coil 539 559 - -
Gabi4455g00068 795 Gene3D - 151 273 IPR036426 -
Gabi4455g00068 795 Gene3D Phosphorylase Kinase; domain 1 478 587 - -
Gabi4455g00068 795 SMART blect_4 38 152 IPR001480 -
Gabi4455g00068 795 SUPERFAMILY Protein kinase-like (PK-like) 496 779 IPR011009 -
Gabi4455g00068 795 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
Gabi4455g00068 795 CDD STKc_IRAK 517 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4455g00068 Gabi-Chr4455 598743 601311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4455g00068 429 783 Receptor kinase-like Gene Family AT5G45780 37.158 9.65e-67 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi4455g00068 Pkinase 5.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4455g00068 - - gmx:100815958 1017.68