Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4455g00057 ATGGCGTGTGCGCAAACTGGGTCAGGCAAAACGGCGGCGTTTTGTTTTCCAATAATATCAGGGATTTTGAAGGGTCGTTCCGCTTTTGGGTTTTCGTCAATGCCTCGTCGTGGTGCTATGGTTGCATATCCTACAGCGCTTATTCTGTCTCCTACTAGGGAGTTATCGTGCCAGATACATGATGAAGTGAAAAAGTTTGCTTATCAAACAGGAGTGAAGGTTGTGGTTGCTTATGGTGGGGCTTCCATTGGTCAGCAGCTACGCAATTTAGAGAAAGGTGTTGATATTTTGGTTGCAACACCTGGGCGCTTGGTTGATATCATCGAGAGAGAAAAGGTTTCACTAACAAGGATCAAATATCTTGCCTTGGATGAGGCAGACCGCATGTTGGACATGGGCTTTGAGCGTCAAATTCGCAAAATCGTGGAGCAAATGCACATGCCACCCCCAGGTGTTAGACAGACATTGCTTTTCAGTGCTACATTCCCGAATGATATACAGAAGCTTGCATCTGACTTTCTATCGAACTACGTATTTCTGACTGTTGGAAAGGTTGGTTCGAGCACTGAACTGATTGTACAGAAAATTGAACAAGTACAGGATACAGACAAAAGAAATCATCTTAGGGATCTTCTTAGTCGTCAAAGGGCACGTGGAGCCAATGGAAAGCATGCTCTAACTCTTGTATTTGTTGAAACAAAGAGAGGAGCTGATGCTTTAGAAAACTGGCTGTCGATCAATGGGTTTCCAGCTATTGCAATTCATGGTGATAAAGTTCAAATGGAGAGGGAACGAGCTTTAAGATCGTTCAAATGTGGTTCTACTCCAATTTTAGTGGCAACTGATGTTGCTTCTCGAGGGTTGGATATCCCGCATGTGGCTCATGTTATTAACTTTGACTTGCCTAGAGACATTGATGACTATGTGCATAGGATTGGAAGAACAGGCCGTGCTGGTAAATCTGGTTTAGCCACTGCCTTCTTCAGCATCAAGAACATCTCCCTTGCAAAGGATCTTGTTGGGCTCTTGCAGGAAGCAAACCAGGATGTTCCTTCTTGGCTCAGCCAGTATGCTCAGGGTTCATCATCCAGTGGTTGTAGCCGTGGAGCTCGGCGCTACAGTGGTGTCAATTATGGTGGTCGTGACTTTCGAAATGTCACTGAACCTGAGGTGGAGAATTACAACAACTTCAGTACTTATGGCAATTCAGATCATGCTGTGGACTCTTATACTGATACCTCCTTTGACATCAAAAACTCTAACAGTGATTCCTCTCTGGATAACTCGAATACAGTTTCTGCGTGCAGTTATCATTACACTGATGCTAATGCTGATATGTACGGAGGTGGGATGGTTGAAGATGGGCCATGTGGTTATGAATCTATTATTCCCACGGGATGGGATTAG 1407 0.4449 MACAQTGSGKTAAFCFPIISGILKGRSAFGFSSMPRRGAMVAYPTALILSPTRELSCQIHDEVKKFAYQTGVKVVVAYGGASIGQQLRNLEKGVDILVATPGRLVDIIEREKVSLTRIKYLALDEADRMLDMGFERQIRKIVEQMHMPPPGVRQTLLFSATFPNDIQKLASDFLSNYVFLTVGKVGSSTELIVQKIEQVQDTDKRNHLRDLLSRQRARGANGKHALTLVFVETKRGADALENWLSINGFPAIAIHGDKVQMERERALRSFKCGSTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSIKNISLAKDLVGLLQEANQDVPSWLSQYAQGSSSSGCSRGARRYSGVNYGGRDFRNVTEPEVENYNNFSTYGNSDHAVDSYTDTSFDIKNSNSDSSLDNSNTVSACSYHYTDANADMYGGGMVEDGPCGYESIIPTGWD 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4455g00057 468 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 180 IPR014001 -
Gabi4455g00057 468 Pfam Helicase conserved C-terminal domain 204 319 IPR001650 -
Gabi4455g00057 468 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 207 358 IPR001650 -
Gabi4455g00057 468 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 358 - -
Gabi4455g00057 468 SMART helicmild6 238 319 IPR001650 -
Gabi4455g00057 468 SMART ultradead3 2 195 IPR014001 -
Gabi4455g00057 468 FunFam ATP-dependent RNA helicase RhlB 182 362 - -
Gabi4455g00057 468 Gene3D - 1 181 IPR027417 -
Gabi4455g00057 468 Pfam DEAD/DEAH box helicase 2 169 IPR011545 GO:0003676|GO:0005524
Gabi4455g00057 468 CDD SF2_C_DEAD 192 328 - -
Gabi4455g00057 468 Gene3D - 182 361 IPR027417 -
Gabi4455g00057 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 335 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4455g00057 Gabi-Chr4455 504323 507194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4455g00057 1 339 Eukaryotic Initiation Factors Gene Family AT3G19760 32.941 1.59e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4455g00057 K11594 - gmx:100817549 701.049