Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4455g00046 ATGGATGAAGATTTGTTGAAGCGCAACACCGATTGCGTTTATTTCTTGGCTTCTCCCTTCACTTGCAAGAAGGGTGGTGAATGTGAGTATCGGCATAATGAGATTGCGAGGCTTAACCCGAGGGATTGCTGGTACTGGTTATCCGGGAATTGCCTTAATCCAACTTGTGCTTTTAGACACCCTCCATTGGATGGGAACACTGGAGTGCAATCTGAACCCACACAATCTTCGTTACCCGCAAACAAGACAATGGCTCCCTGTTATTTTTTCTTTAATGGATTTTGCAACAAAGGTGACAGATGCTCATTTTTGCATGGGCCTGGTGATAGCTTTTTTACTTCAAGTCCTGTGAAGAATGACAATGGAGGCAATGATGCACTCAACCTAGAAAACAAAACATCATCAGAAAATAAAACAGGTGTAGCATCAACACCAACTGAAACACATTTCGATCCATCTTTAACTTCCCCTCAGGCGTTGTGTGATTTTAAACTTCAGCCTAAGGAAGATCTTCAGCTACCATTGCCCAAAAATGTTAAACAACAAGGTTCTTGCCTAGAGATATCTGCTTTTGAGTGTAAAGAAGCTACAGTGACTAGGTCAGACTCTTTGTTTCCAGATGACAACTTTGTTCATAACATATCTCATTTATGTATGGAGCAGAGTTTAGAGGAGCAAGTAAATAGTCACATAGAGCGTGAGGAGCGGTGGGAATCGTCCCCTGGATTTGATGTTATTGTTCATGATGAATTGGAGAACTTGGGTTATGAGGGTGATTCTGAATATTTGCCTGTGCTTGATAGGGATGATCAGGAACTGAATGAGCAATACTTGGGGTATGATTTTAAAGATCCAGTTGAGTATGATACTATGTGCCCAGAAGCTGCTATTCTGTATGAACAAGAAACATATGATGGTTACAGATATTTGGATAGAGATCTTACTCATGGTAGTGGCAGAAAAGTTTGTGCTTATTCCAGAGAGATAATCTTAGATTCTATTTTGTCCAGGAAAAGGATTCGGATGTCAGGCGAGATGGCTGCTTGTGACAATAACTTAGATCTAAGATACCATCTGAGGAGACGTAGGGAAATTAATGGTCCTCCTTCTACAGGTTTCTTAAGAAGACGTGAATCATCATCTTTGATAGTTCGAAATCAGGAAAGGCATCAAAGGCATGGCATTAATCAGCGGCCAAGTAGAAGATTGACGTCACAATTGGGATTTAGCACTATAGACTCAAATCGAGAGGTTGAAACTCTTTCAAATACTAATAAGCACAAGTTATTTAGGCATTCTCAGCAACATAGGCCAAGAAATCATTATGGAGAAAAACCAGCTAAACGGCAGTTTCTTTCATCTAAAATATCCAGGAAACCAGTTTTAAAGCAAAGGAGATTTATTCATGAGTCCTCTACATTTACAGGTCCTAAGACTCTCGCAGAAATTAAAGAAGAGAAGAAGAAGGCTGAAGAAAATTTTCATTCTAAAATCACATCAGCTGATTTCCAGGATCCCAAACCTCTGAGTGAAATTCTCAAGGATAAAAGGAGTATGGATCGAGTGAGAGATGGCAATACCTCCGCCAATTGA 1593 0.4011 MDEDLLKRNTDCVYFLASPFTCKKGGECEYRHNEIARLNPRDCWYWLSGNCLNPTCAFRHPPLDGNTGVQSEPTQSSLPANKTMAPCYFFFNGFCNKGDRCSFLHGPGDSFFTSSPVKNDNGGNDALNLENKTSSENKTGVASTPTETHFDPSLTSPQALCDFKLQPKEDLQLPLPKNVKQQGSCLEISAFECKEATVTRSDSLFPDDNFVHNISHLCMEQSLEEQVNSHIEREERWESSPGFDVIVHDELENLGYEGDSEYLPVLDRDDQELNEQYLGYDFKDPVEYDTMCPEAAILYEQETYDGYRYLDRDLTHGSGRKVCAYSREIILDSILSRKRIRMSGEMAACDNNLDLRYHLRRRREINGPPSTGFLRRRESSSLIVRNQERHQRHGINQRPSRRLTSQLGFSTIDSNREVETLSNTNKHKLFRHSQQHRPRNHYGEKPAKRQFLSSKISRKPVLKQRRFIHESSTFTGPKTLAEIKEEKKKAEENFHSKITSADFQDPKPLSEILKDKRSMDRVRDGNTSAN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4455g00046 530 Pfam Zinc-finger containing family 7 65 IPR041686 -
Gabi4455g00046 530 Gene3D - 71 194 - -
Gabi4455g00046 530 Gene3D - 3 63 - -
Gabi4455g00046 530 SUPERFAMILY CCCH zinc finger 81 106 IPR036855 GO:0046872
Gabi4455g00046 530 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 523 - -
Gabi4455g00046 530 MobiDBLite consensus disorder prediction 122 151 - -
Gabi4455g00046 530 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Gabi4455g00046 530 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Gabi4455g00046 530 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Gabi4455g00046 530 MobiDBLite consensus disorder prediction 508 523 - -
Gabi4455g00046 530 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Gabi4455g00046 530 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Gabi4455g00046 530 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Gabi4455g00046 530 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Gabi4455g00046 530 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 107 IPR000571 GO:0046872
Gabi4455g00046 530 MobiDBLite consensus disorder prediction 495 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4455g00046 Gabi-Chr4455 433971 437566 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4455g00046 zf-CCCH_3 1.1e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4455g00046 - - aprc:113847503 857.825