Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4455g00043 ATGAGTTTCTCTGATCATCTCCCACCTTTTATGGTGATGTCACCGCCGACATTTGCCGCAAACAACGATGCTATTGACGTGAGTCTTCAATTCCCGATGAACAACGAACCATTCGACCCACATTCATCATTCGATCAACCCCCTTCATTCAAGAGGGCCAGGATTTCTGATAGCAACCACTCCAATGCGTTGGCATGCCCTCCCAGGATGATTCAGCCCCCCCAGAACCCCTCAGCCAACAAAAGAACGAGCCACATTTTCTTCAAGACCCGCATCTGTGCAAAGTTCAAATTTGGTGATTGTAGGAACGGTGAAAATTGCAACTTTGCACATGGGTTTGAAGACATTAGGCAGCCACCGCCAAATTGGCAGGAGCTTATTGGCTCACGCAATGAAGAACGGTCATCATCGGGGAATTGGGATGCTGACCAGAAATTTATTCATAAGATGAAGCTGTGCAAGAAGTATTACAATGGGGAGGAATGTCCCTATGGTGATAACTGTAGTTTTCTTCATGAAGACCCCACCAAGTTCAGGGAGAGCTCAGCAATAAGCATAGGAACTGATAATGGATCCCCAAAGTCCTACGTGAATGGCTTTAGTAATATAGAAAGTAATAGATCTGTGAACACAGGCTTAAATGTTTCCAGGGGAATCGTAAAGTCTACTTATTGGAAGACCAAACTATGTATCAAGTGGGAGAGAACAGGCTACTGCCCCTTTGGGGAGGACTGTCACTATGCTCATGGGCATGCAGAGTTACAAGTTCCTGGTGGACGCATTGAAGCAGAAACTGCAGGTGCCGTTTCAATTTCAACTAAAGCTACCCTTCCAACTTTACCAAAAGCTACATCAGTTTCTACCAATGATGCACCTCCTAACTACACAACAAGTCTACCTCCGGCAAGTGAAGAGGAGCAGGGTAACAAGAGTTTGCTGAAGTGGAAAGGACCAAAGAAGATCAATAGAATTTATGCTGATTGGCTTGACGATTTACCGCTTCTTGACAACTTCCCAAGTAGAGTGGATAGCTGA 1035 0.4522 MSFSDHLPPFMVMSPPTFAANNDAIDVSLQFPMNNEPFDPHSSFDQPPSFKRARISDSNHSNALACPPRMIQPPQNPSANKRTSHIFFKTRICAKFKFGDCRNGENCNFAHGFEDIRQPPPNWQELIGSRNEERSSSGNWDADQKFIHKMKLCKKYYNGEECPYGDNCSFLHEDPTKFRESSAISIGTDNGSPKSYVNGFSNIESNRSVNTGLNVSRGIVKSTYWKTKLCIKWERTGYCPFGEDCHYAHGHAELQVPGGRIEAETAGAVSISTKATLPTLPKATSVSTNDAPPNYTTSLPPASEEEQGNKSLLKWKGPKKINRIYADWLDDLPLLDNFPSRVDS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4455g00043 344 ProSiteProfiles Zinc finger C3H1-type profile. 147 175 IPR000571 GO:0046872
Gabi4455g00043 344 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Gabi4455g00043 344 SUPERFAMILY CCCH zinc finger 221 255 IPR036855 GO:0046872
Gabi4455g00043 344 PANTHER CCCH ZINC FINGER/TIS11-RELATED 41 181 IPR045877 GO:0003729
Gabi4455g00043 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 113 IPR000571 GO:0046872
Gabi4455g00043 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 250 IPR000571 GO:0046872
Gabi4455g00043 344 FunFam Zinc finger CCCH domain-containing protein 219 256 - -
Gabi4455g00043 344 SUPERFAMILY CCCH zinc finger 147 174 IPR036855 GO:0046872
Gabi4455g00043 344 MobiDBLite consensus disorder prediction 281 305 - -
Gabi4455g00043 344 MobiDBLite consensus disorder prediction 281 310 - -
Gabi4455g00043 344 SMART c3hfinal6 224 251 IPR000571 GO:0046872
Gabi4455g00043 344 SMART c3hfinal6 147 174 IPR000571 GO:0046872
Gabi4455g00043 344 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Gabi4455g00043 344 Pfam CCCH-type zinc finger 151 172 IPR041367 -
Gabi4455g00043 344 SUPERFAMILY CCCH zinc finger 84 118 IPR036855 GO:0046872
Gabi4455g00043 344 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Gabi4455g00043 344 Gene3D - 80 118 - -
Gabi4455g00043 344 Gene3D - 219 256 - -
Gabi4455g00043 344 Gene3D - 144 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4455g00043 Gabi-Chr4455 401627 403564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4455g00043 226 255 C3H Transcription Factor Family AT1G68200 56.667 2.16e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4455g00043 zf-CCCH 1.4e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4455g00043 - - gmx:100793865 530.791