LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4455g00035	ATGGCCATCACCGCCACACACACCAGAGATGAACCCGACTACGACAGTAGCTCCTCCTCCATCACCGCGCCGGAATCAAGCCGGAGCTGGATGAGCAACCTCAGCTTCAGCAGCCGCCGGCGCCGGAGCTCCGTCTCCGTTTGTTCCTCAACGACAGAAACCTCTTTGTTCCTCGGTTCACAAGCCAAGCCTCACAAGGCAAACCAAGCTGCATGGGAGGCCATGCGGCGGCTCCGCAGCGACAAGGGCCGTCTCGGACTGGACCACTTCCGCCTGCTGCGGCGGCTGGGAAGCGGTGACATAGGGAATGTGTACCTTTGCCAGATAAGGAACCCTGTGGTGGGGTTGCCACAGTGCTTCTATGCAATGAAAGTTGTGGACAGAGAAGCACTTGCCATAAGGAAGAAGTTACAGAGAGCAGAGATGGAGAAAGAGATTTTGGGTATGCTTGATCATCCTTTTTTGCCCACTTTGTACACTGAGTTTGAAGCTTCTCATTACTCTTGCTTGGTCATGGAGTTTTGTCCTGGTGGAGATTTGTACGCTGCTCGCCAACGCCAACCAGGGAAGCGCTTTAGCTTAACATCCGCTAGGTTTTATGCAGCTGAAACACTGTTGGCACTAGAGTATCTTCACATGATGGGCGTAGTGTACAGGGATTTGAAGCCGGAGAATGTGTTGGTAAGGGAGGATGGACACATTATGCTTTCAGATTTTGATCTTTCTCTCAAATGTGATGTTGTTCCCAAGCTATTAAGGAGTAAGACTAGATTGGAACGCAGTGTCAAGAGTACAAAGAGATCTGCACCTGCTTGCACTGCCCCCATGCAGCCTGTGCTATCTTGTTTCTCAGCATCAAGCAAGAAAAAGAAAGCAACAGTGACAACGGTTATAAGAGAAAATGTTGAAGTCCAAGAACTTGATCCAGAGCTGGTGGCAGAGCCAATTGATGCTCGGTCTAAGTCATTTGTGGGGACTCATGAGTACTTGGCACCAGAAGTGATATTGGGGCAAGGTCATGGGAGTGCAGTGGATTGGTGGACTTTTGGGGTGTTCTTGTATGAAATGTTATATGGTAAAACACCCTTCAAAGGTGAAAATAATGAGAAAACACTCCTAAACATCCTGAAGCAGCCATTGGCTTTCCCTAGAATTGCAGTGAGCAGTAGCAAGGAGTTTGAAGAGATGGTGAAAGTTCAAGACCTTATAAGTAAGCTATTAGTGAAGAATCCCAATAAGAGAATTGGAAGCTGCATGGGTTCTGTTGAGATAAAAAAGCATGAGTTCTTCAAGGGTGTTAATTGGGCTTTAATTAGATCAGTTAGACCCCCTGAGGTTCCTGCTGATATGAACAAGATTAGGAGTAGGGTTTTGCTACCTAAACTAAGCAGAAAAGACAGGGATCAGCCATATCAGCTTACTCATCATTTTGAATACTTCTAA	1443	0.4726	MAITATHTRDEPDYDSSSSSITAPESSRSWMSNLSFSSRRRRSSVSVCSSTTETSLFLGSQAKPHKANQAAWEAMRRLRSDKGRLGLDHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLQRAEMEKEILGMLDHPFLPTLYTEFEASHYSCLVMEFCPGGDLYAARQRQPGKRFSLTSARFYAAETLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRLERSVKSTKRSAPACTAPMQPVLSCFSASSKKKKATVTTVIRENVEVQELDPELVAEPIDARSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGKTPFKGENNEKTLLNILKQPLAFPRIAVSSSKEFEEMVKVQDLISKLLVKNPNKRIGSCMGSVEIKKHEFFKGVNWALIRSVRPPEVPADMNKIRSRVLLPKLSRKDRDQPYQLTHHFEYF	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4455g00035	480	Gene3D	Transferase(Phosphotransferase) domain 1	175	244	-	-
	Gabi4455g00035	480	SMART	serkin_6	90	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4455g00035	480	FunFam	protein kinase PINOID	175	243	-	-
	Gabi4455g00035	480	ProSiteProfiles	Protein kinase domain profile.	90	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4455g00035	480	PANTHER	FLIPPASE KINASE 1-RELATED	26	451	-	-
	Gabi4455g00035	480	Gene3D	Phosphorylase Kinase; domain 1	88	174	-	-
	Gabi4455g00035	480	SUPERFAMILY	Protein kinase-like (PK-like)	74	451	IPR011009	-
	Gabi4455g00035	480	Gene3D	Transferase(Phosphotransferase) domain 1	317	448	-	-
	Gabi4455g00035	480	Pfam	Protein kinase domain	320	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4455g00035	480	Pfam	Protein kinase domain	91	245	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4455g00035	480	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	216	228	IPR008271	GO:0004672\|GO:0006468
	Gabi4455g00035	480	FunFam	protein kinase PINOID 2	88	174	-	-
	Gabi4455g00035	480	CDD	STKc_phototropin_like	88	448	-	-
	Gabi4455g00035	480	FunFam	serine/threonine-protein kinase D6PK-like	318	448	-	-
	Gabi4455g00035	480	Coils	Coil	123	143	-	-
	Gabi4455g00035	480	MobiDBLite	consensus disorder prediction	1	25	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4455g00035	Gabi-Chr4455	359539	361813	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4455g00035	1	480	AGC Kinase Gene Family	AT2G26700	58.473	0.0	595

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Gabi4455g00035		Pkinase	1.4e-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4455g00035	K08286		-	gmx:100777988	828.935