Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4455g00014 ATGAAAGGGGAAGTACAGCTTCAGCCTCCACAGGTTCTGCAAAACCCTAGTGATTCCGACCCTTTACTCGATAACCAGGAGGAAGATGAGTCACCAGGAGGCTCTAGTGAGATTAAGGATGAGGAAGACGTCGAGGCTGGCTTACTTCCTTGTTGTCGAATTTGCCTCGAAAGTGATTGCGACCCAGAGCATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGATTTGCTTTCTCACACTGCACCACATGCAAAGCCCAATTTCATCTAAGAGTGGAATTGTTTGAGGACAACTCTTGGCGTAAAATGAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTTCTTGTTTTTGTGGCTGTACAAACTGTGATTGCTGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGGACCTTCAGGAACTCATTTGACGATGGTTGGGATAGGATACTCTCAAAGCATCCTATACCATTTTATTATTGTATTGGAGTGCTGGCCTTCTTTGTACTGATTGGATTTTTTGGTCTCATACTGCATTGCTCCTCCCTTAATTCCAATGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATCTTGGATTGCTTTCCTGCATCAATGGAGGCGTGCTTTGCCCTTGTGGTTGTTTTCGTTGTCATCTTTGCAATTCTTGGTATAGCTTATGGTTTTCTTGCAGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGGAATACGTAGTAGAGGATCTTCGTGGCTGTTATTTCCCACCAAAGTTGGACCCAGAACATGAAGGTCGCTTGAAAATGCTTAAGCTTTTGTGA 924 0.4459 MKGEVQLQPPQVLQNPSDSDPLLDNQEEDESPGGSSEIKDEEDVEAGLLPCCRICLESDCDPEHELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKMKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLRGCYFPPKLDPEHEGRLKMLKLL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4455g00014 307 SUPERFAMILY RING/U-box 50 107 - -
Gabi4455g00014 307 SMART ringv_2 51 103 IPR011016 GO:0008270
Gabi4455g00014 307 MobiDBLite consensus disorder prediction 1 42 - -
Gabi4455g00014 307 CDD RING_CH-C4HC3_MARCH 52 103 - -
Gabi4455g00014 307 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 307 - -
Gabi4455g00014 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 116 IPR013083 -
Gabi4455g00014 307 ProSiteProfiles Zinc finger RING-CH-type profile. 44 109 IPR011016 GO:0008270
Gabi4455g00014 307 MobiDBLite consensus disorder prediction 22 36 - -
Gabi4455g00014 307 Pfam RING-variant domain 52 102 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4455g00014 Gabi-Chr4455 192013 196188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4455g00014 1 307 C3H Transcription Factor Family AT1G11020 79.128 2.05e-170 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4455g00014 - - gmx:100818950 586.645