Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4455g00008 ATGACGATGGACGACGATAGCTCCATATATGTTGGGGGTCTCCCCTACGACGCCACCGAAGATACCATTCGCACTGTCTTCAATTTGTATGGCGCCATCCTTGACGTCAAGATTATTAATGACCAACGCACTAGGGGAAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCAGCAATGGATGCCATCCACGACATGAATGGCAGAACCGTGGACGGGCGAGTGGTTAAAGTTAATGGGGTGAGAACTCGTGCAGGGAGATCAAATTTTGGCAGAGAACGTTATTATTATCATAATGACGAGAGGAATGGAGACTGGGATCGTGGTAGAGATCGAGACCGAGACCGATATTATGATCATGATAATGACAAGGATGAATACAGGAATCGGGATGGTGATTGGTCTCAAGAGCGTGATAGGTCTCGAGACCGCGACCGCGACAGGGATAGAAAATTTGATCAAATGCATGATTATGATCAAGGAAGAGAACCTATGTTGGATAATGATTGGAGTCGAGGGGATGATCGGGCAGAAAATCAACAAGAAAACAGCAGGGCACATGGTGGAGATGTGGATAGAGACCACAACTTAGATTTGGATACAGATAGGAAGATGGATAGGACCAGTGATCCTGATAGAAGTTTTGATGAGGATAGAAAAGAGCATTCAAGGAGAAACATTGATTTGAATGTTGCAAATCAACACAGCATGGATCCTTCATCGGAATCAGATGGTGATCACAATGATCAGGTAGACGATCAACTAGAGAGGTCAACCCAACAGCTTGATTTACTAAAAAAGGAGGTTTCTCAGATAGAAGAGAGATTGGAAGAGAAAAGACTTCTTGTTATGGAGTTACAAAAGCAGTCTAGGAAACTGGAGGATTCACTGATCAATGTGAAGAAACACACTTCAAATCGTCAGATGCAGTTGACCAAGCTGCATAAATGTTTTGCGCAAGTGAAAGATTGCATGGAAAGTCTTAAAACCAGTGAAAGAGAACTTCAGGCTCTAGTTGATACAGCAATGTTAGATAGTGATGGTGATGGTGTTGGCTTAAAGGATGGACAACTCACAAATGGAAGTCTTGATGGTAGATAG 1104 0.4284 MTMDDDSSIYVGGLPYDATEDTIRTVFNLYGAILDVKIINDQRTRGKCYCFVTFTNPRSAMDAIHDMNGRTVDGRVVKVNGVRTRAGRSNFGRERYYYHNDERNGDWDRGRDRDRDRYYDHDNDKDEYRNRDGDWSQERDRSRDRDRDRDRKFDQMHDYDQGREPMLDNDWSRGDDRAENQQENSRAHGGDVDRDHNLDLDTDRKMDRTSDPDRSFDEDRKEHSRRNIDLNVANQHSMDPSSESDGDHNDQVDDQLERSTQQLDLLKKEVSQIEERLEEKRLLVMELQKQSRKLEDSLINVKKHTSNRQMQLTKLHKCFAQVKDCMESLKTSERELQALVDTAMLDSDGDGVGLKDGQLTNGSLDGR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4455g00008 367 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 196 - -
Gabi4455g00008 367 Coils Coil 249 304 - -
Gabi4455g00008 367 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Gabi4455g00008 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Gabi4455g00008 367 Gene3D - 2 97 IPR012677 -
Gabi4455g00008 367 MobiDBLite consensus disorder prediction 102 252 - -
Gabi4455g00008 367 CDD RRM_SF 9 80 - -
Gabi4455g00008 367 SMART rrm1_1 8 80 IPR000504 GO:0003723
Gabi4455g00008 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Gabi4455g00008 367 MobiDBLite consensus disorder prediction 102 229 - -
Gabi4455g00008 367 PANTHER GEO13361P1-RELATED 6 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4455g00008 Gabi-Chr4455 98193 101834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4455g00008 2 79 Eukaryotic Initiation Factors Gene Family AT1G71770 29.487 4.69e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4455g00008 - - gmx:100816804 544.658