Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4455g00007 ATGGCTTCACCATCCGAACTAACCCTTGATTGCAAGCCCCATAGCTATTCCATGTTACTGAAATCATTTGGAGATCAAACTGATCAGACATACAAGCTTGAAGAGTTCCTTTCTCGCCTTGAGGAAGAACGTCTCAAGATTGATGCTTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTTACCAACGCCATGGAGGCTTCAAGGCAGCAACTTCAGGCCTTCAGAGTAAATCAAAACACAAGGCCTGTTCTTGAAGAGTTCATACCCATGAAGCAATTAACCTCAGAAAGCTCAGAGAAGACAACAAATATATCTGATAAGGCAAATTGGATGACATCTGCTCAACTATGGAGCCAAGCAAGCGAAGGAACCAAACAACAATCCACAGTTACATCACCTAAAGAAGCTGATATTGGCTTCAGCATCAGCCCTAAGCTAAATATTCTAGAGCACAAACAGAGGAATGGGGGAGCCTTTCTCCCATTCTCAAAAGAACAACGAAACACATGCCAAGACTCTGCATTTCGGGCTCTCCCTGAGCTAGCCCTTGCCTCTGCTGAGCAAGAAATGGAGGAGAAGAAACGTGCAGAGCCAGAAAAGGGAGTTTCATGTCAGAAGAGGGAGAATTCAGGAAATGATGTAGCGGTAGTTGATCAAGGAAAAGGGAGTCCAGTTCCATCTCATGCACAAACAAACACTACTAACCAAACTCATAGGAAAGCAAGAAGGTGCTGGTCCCCAGATTTGCACCGTCGATTTCTTAATGCTCTTCAAATGCTCGGTGGATCTCAAGTGGCAACCCCAAAACAGATTAGGGAGTTGATGAAGGTGGACGGTTTGACAAATGATGAAGTTAAAAGCCATCTTCAGAAATATAGGCTTCACACAAGAAGACCCAGTCCAAGTCCACAAACAGGTGCACAACCACCACAGCTTGTGGTTCTAGGAGGAATCTGGGTCCCACCGGAATATGCCGCCGCCCATACAGCCACCACTGCCCTCTATGGCGCGCACCCTTCCTCCCACGCGCCACCACCGCATTACTGTGCTGCAACCCCAGTGCCCCAAGAGTTCTACACCACCGCGCCGCAGCAGCAGCTGCTTCCGCCGCCTCTGCCGCACCACAACGCCTTCCGTCAGCATCGCCACCACCTGAACATGTACAAGACTACGCCACACGGCCAGGGCTCGCCGGAATCCGACTTTCCCGGAGGTGGGGATCCGTCGGAGAGTATTGAGGATGGGAAGTCGGAGAGTAGCAGCTGGAAGGGAGAGAGTGGTGAGAACGAAGGGGAGAGAAAAGGGTTGGCTGAGGAGAGCAATGGGAGTGAGATCACTCTCAAATTCTAG 1353 0.4967 MASPSELTLDCKPHSYSMLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFRVNQNTRPVLEEFIPMKQLTSESSEKTTNISDKANWMTSAQLWSQASEGTKQQSTVTSPKEADIGFSISPKLNILEHKQRNGGAFLPFSKEQRNTCQDSAFRALPELALASAEQEMEEKKRAEPEKGVSCQKRENSGNDVAVVDQGKGSPVPSHAQTNTTNQTHRKARRCWSPDLHRRFLNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQTGAQPPQLVVLGGIWVPPEYAAAHTATTALYGAHPSSHAPPPHYCAATPVPQEFYTTAPQQQLLPPPLPHHNAFRQHRHHLNMYKTTPHGQGSPESDFPGGGDPSESIEDGKSESSSWKGESGENEGERKGLAEESNGSEITLKF 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4455g00007 450 FunFam Myb family transcription factor 240 298 - -
Gabi4455g00007 450 Coils Coil 33 53 - -
Gabi4455g00007 450 MobiDBLite consensus disorder prediction 187 207 - -
Gabi4455g00007 450 MobiDBLite consensus disorder prediction 187 244 - -
Gabi4455g00007 450 Pfam Myb-like DNA-binding domain 243 294 IPR001005 -
Gabi4455g00007 450 SUPERFAMILY Homeodomain-like 238 299 IPR009057 -
Gabi4455g00007 450 MobiDBLite consensus disorder prediction 389 450 - -
Gabi4455g00007 450 MobiDBLite consensus disorder prediction 225 241 - -
Gabi4455g00007 450 Gene3D - 240 298 - -
Gabi4455g00007 450 NCBIfam myb-like DNA-binding domain, SHAQKYF class 241 296 IPR006447 GO:0003677
Gabi4455g00007 450 MobiDBLite consensus disorder prediction 412 440 - -
Gabi4455g00007 450 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 424 IPR044787 GO:0003700|GO:0006355
Gabi4455g00007 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 298 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4455g00007 Gabi-Chr4455 92727 95664 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4455g00007 1 450 G2-like Transcription Factor Family AT2G03500 51.653 1.77e-132 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi4455g00007 Myb_DNA-binding 7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4455g00007 - - gmx:100807925 692.96