Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4455g00006 ATGGCGCTGCTTAATATTATTCTTGTGTTTCTGCATTTGGTTCTGCAACTGAGTGTCCGAGTCAACTCTGAGCCAACACGGGACAAGCAAGCCCTCCTTGCTTTTATCTCCCAAACCCCACACTCTAACAGAGTCCAATGGAACGCTTCCGACTCGGCTTGCAACTGGGTCGGTGTTCAATGCGACTCTTCACGTTCCTTTGTCTATTCCCTCCGTTTACCCGGCGTTGGCCTTTTGGGTCGGGTTCCGACCAACACAATCGGACGCCTCACACAGCTTCGGGTCCTCAGTCTCCGCTCCAATGGCCTCACCGGCGAGATCCCCTCTGATTTCTCCGATTTGACCTTCCTTCGCAGCCTTTACCTCCAGAAGAATCAGTTCTCTGGCGAGTTCCCTCCTAGTTTGACTCGCTTGACTCGTTTGAATCGCTTGGATCTCTCCACCAACAACTTCACCGGATCAATTCCTTTCTCCATCAACAACTTGACCCACCTCACCGGTCTCTTCTTGCAGAACAACGGCTTCTCCGGTAGCCTCCCAAGCGTTACAGCCAAATTGGTTGATTTCAATGTTTCCAATAACAGCCTTAACGGCTCCATCCCCGAGACACTCTCCAAGTTCCCCGAATCCTCATTCGCCGGAAATTCAGATCTCTGCGGGCCACCTTTGAAACATTGTACCCCGTTTTTTGCCCCGGCGCCGTCACCTGCGTCCATTTCGCCGGCGAACCCGGCGGGGAAGAAGTCCAAAAAGCTCTCCACTGGTGCCATTATCGGAATCGTTGTTGGGTCTGTTCTCGGCGTCTTGTTATTGCTGCTACTCCTGCTGCTTTGCCTCCGCAGGCGGCAACGCCGGCAACCGGCTAAGCCGCCGAAGGCCGTGATTGCGGAACGTGCGGCACCGGCGGAGGCAGGAACGTCGTCGTCGAAGGACGATATCACGGGTGGGTCGGCGGAGGCGGAGAGGAACAAATTGGTGTTCTTCGAAGGAGGAATATACAGCTTCGATTTGGAGGATTTGCTGAGGGCTTCGGCGGAGGTTTTGGGGAAGGGGAGTGTGGGGACTTCGTACAAGGCGGTGTTGGAAGAAGGGACGACGGTGGTAGTGAAGAGGTTGAAGGATGTTGTTGTGACCAAAAAAGAGTTTGAGATGCAAATGGAGGTTCTGGGTAAAATCAAGCATGAAAATGTGGTTCCTCTAAGAGCCTTTTATTTCTCCAAGGATGAGAAATTGCTCGTTTACGACTACATGTCTGCTGGTAGTTTGTCTGCTCTGCTTCACGGGAGCAGAGGATCTGGGCGAACCCCGCTAGACTGGGACAACAGGAGGAGAATAGCATTAGGAGCCGCAAGAGGCTTGGCATACCTCCACGTGTCAGGCAAGGTGGTCCATGGCAATATCAAATCTTCCAACATCCTCCTTCGAGGACCGGACCACGACGCCTGCGTTTCGGACTTTGGACTCAACCCCATGTTCGGCAACGGAGCCCCGTCCAACCGGGTCGCGGGTTATAGGGCACCCGAGGTTGTAGAAACCCGAAAGGCCAGCTTCAAGTCTGACGTGTACAGTTTTGGTGTGTTGTTGTTGGAATTATTAACGGGGAAAGCACCCAACCAAGCTTCTTTGGGTGAGGAGGGTATTGATCTGCCCAGGTGGGTCCAGTCAGTGGTTCGTGAAGAGTGGACCGCGGAAGTGTTCGATGCCGAGCTAATGAGGTTCCATAACATTGAGGAGGAGATGGTTCAGTTGTTGCAGATTGCGATGGCTTGTGTTTCGGTTGTGCCTGACCAGAGGCCTAGCATGCAAGACGTGGTGCGAATGATTGAGGACATGAACCGAGGCGAGACCGATGAGGGTTTGAGACAGTCCTCCGATGATCCTTCAAAAGGGTCCGAGGGTCAGACCCCACCTCCGGAGTCAAGGACTCCAACTACATCGCTCACACCTTAA 1950 0.5344 MALLNIILVFLHLVLQLSVRVNSEPTRDKQALLAFISQTPHSNRVQWNASDSACNWVGVQCDSSRSFVYSLRLPGVGLLGRVPTNTIGRLTQLRVLSLRSNGLTGEIPSDFSDLTFLRSLYLQKNQFSGEFPPSLTRLTRLNRLDLSTNNFTGSIPFSINNLTHLTGLFLQNNGFSGSLPSVTAKLVDFNVSNNSLNGSIPETLSKFPESSFAGNSDLCGPPLKHCTPFFAPAPSPASISPANPAGKKSKKLSTGAIIGIVVGSVLGVLLLLLLLLLCLRRRQRRQPAKPPKAVIAERAAPAEAGTSSSKDDITGGSAEAERNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFEMQMEVLGKIKHENVVPLRAFYFSKDEKLLVYDYMSAGSLSALLHGSRGSGRTPLDWDNRRRIALGAARGLAYLHVSGKVVHGNIKSSNILLRGPDHDACVSDFGLNPMFGNGAPSNRVAGYRAPEVVETRKASFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMACVSVVPDQRPSMQDVVRMIEDMNRGETDEGLRQSSDDPSKGSEGQTPPPESRTPTTSLTP 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4455g00006 649 MobiDBLite consensus disorder prediction 610 625 - -
Gabi4455g00006 649 CDD STKc_IRAK 348 611 - -
Gabi4455g00006 649 Gene3D Phosphorylase Kinase; domain 1 309 416 - -
Gabi4455g00006 649 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 417 622 - -
Gabi4455g00006 649 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Gabi4455g00006 649 SUPERFAMILY Protein kinase-like (PK-like) 346 608 IPR011009 -
Gabi4455g00006 649 ProSiteProfiles Protein kinase domain profile. 342 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4455g00006 649 Gene3D Ribonuclease Inhibitor 186 226 IPR032675 -
Gabi4455g00006 649 MobiDBLite consensus disorder prediction 289 315 - -
Gabi4455g00006 649 MobiDBLite consensus disorder prediction 626 649 - -
Gabi4455g00006 649 SUPERFAMILY L domain-like 31 219 - -
Gabi4455g00006 649 Pfam Protein kinase domain 345 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4455g00006 649 FunFam Probable inactive receptor kinase RLK902 25 183 - -
Gabi4455g00006 649 Gene3D Transferase(Phosphotransferase) domain 1 417 629 - -
Gabi4455g00006 649 FunFam pollen receptor-like kinase 1 311 416 - -
Gabi4455g00006 649 MobiDBLite consensus disorder prediction 610 649 - -
Gabi4455g00006 649 PANTHER OS05G0588300 PROTEIN 4 624 - -
Gabi4455g00006 649 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4455g00006 Gabi-Chr4455 64582 67783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4455g00006 3 629 Receptor kinase-like Gene Family AT5G58300 52.978 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi4455g00006 Pkinase 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4455g00006 - - gmx:100806857 961.829