Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4455g00004 ATGTCTCGCCTCAACTGGGATGCTGGTGAAATGTTAGATGCGTATATCTATGATTATCTCACGAAGAGACAATTACATGCTTCTGCAAAAGCATTTCAGGCTGAAGGAAATGTTTCAACCGATCCTGTTGTTATAGACGCACCCAGTGGTTTTCTCTTTGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCTAGGACAGACGAGAATCGTTCAGAAGCAGCAACATTTTACAATAAGAGCCAACAAAGTAAGGCTCGAGAAATGCGGAAGCGACAAGAGCAAGAGCATCAGAGTCCAAACCAGAATCAACAAATGCAAATGCAGTACTTATTGCAGAAGCATGCTCAACAGCAGCAACATAGGAGTGGAACTCAACTTGTTAGTGGGAGTGCTAGCAGTCCTATTAGCAATGACCCTTCGATGAGGCAGAACGAGGCAACATCTAATGCTATGGCAACAAAAATGTATGAGGACAGGTTGAAGCTTCCACTCCAGAGAAATGTTTTAGATCATGCGGCCATCAAGAAGGTTGATGGTAATGTTGGTCAGCTTCTGGACCCAAATCATGCCTTTTTGTTGAAAGCAGTAGCAGCAACAACTGGTGGACATGCTACGGGACAAACATTGCTCAGTGCACCTAGCATTTTACAGGGGAATCTTCAACAAATTCAAAATCAGAATCAGCAACTTCCAGGGTGTACACAAGATATGAATGCAATGATGAGGTCTCAAGCTGTTGTTCCTCAAGGATCCTTTATCGGTGTTCATGGTTCAAATCAAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTTTAGCAGGACTAGATCAACTTCGTTCAGGACTTCTCCCGCCGAATAATTTGATGCAATCTCCAGAGTCTTTCAATCAACTTTCACTACGGCAGCAACTTATGCTTCAGACACAGCATAATTTAGTTTCTCCATCTGTCAGTGATTTTGAGAGCAGAAGATTTGGAGTGCTTCTTAATCAAAAGATGGGTCTTGGGAAAGATGGCCAATTAAATTCTGTTGGTGATTTAATTCCTAATGTTGGAACACCTGCACATATTGGTTCACCTATGTTGCCTCATCCAGACTCAGATATGTCTCTTAAGCAACAAGTTCAAAAGAGTAGTCAGCAACTCCAACAATATTCAACACAGCGTACTCGTTCAAGCCAACAGTCTGAGAGTCTCCAGCGGCTAGAAAAATTTGGTTCTAGCAGCTTACCAAGAAATGACCAGGCTTCCAAAAGTCAAATTGCGAAAAAGCGAAAGCAAGCATCATCTTCAGGTCCTGCCAATAGCCCTGGAACTGCAAACACCACAGGACCATCTACTGATTCACCTTCAACACCATCTTCCCATGCAGCAGGAGATGGGATGACTGTGCCAACTGTCCAACAGAATGTTCCTTCTTCAAAGTCAATGCCTATGTTTGGTACTGATGGTTTGGGCTCGCTTACATCAGCCGAGAATCAATTGGCTGATATGGACCAACTTATGGGTGATGGACCTTTGGTTGACAAAGTTGAGTCATTCTTATCTCCTGATGAGGCAGATCCTGAAGTAAGAGTTGGCAAAGGATTCTCATTCAAGGAGATCAAGCATATAATGGCAAGTACACATAAAGTTGAGTGTTGTCACTTCTCATCAGATGGAAAACTGTTTGTTACTGGTGGCCATGATAAAAAGGCTTCTTTGTGGTGCACAGAATCATTTAACCTGAAATCTATACTTGAAGAGCACGCTCAATGGATAACTGATGTTCGATTTTGTCCAAGTATGTTGCGTGTTGCTACATCCTCAGCTGACAAGACTGTTAGGGTTTGGGATGTTGATAATCCTGGTTATTCTCTTCGAACATTCACAGGACATACAACAACTGTCATGTCACTAGATTTTCACCCTAGTAAAGACGACCTTATTTGCTCTTGTGACAATAATGAGATAAGATATTGGAGCATAAAAAATGGTAGTTGTACTGGGGTTCACAAGGTTGGTGTAACTCAGATAAGATTTCAACCTTATTTGGGAAAGCTTCTTGCTGCTGCTGTTGATAAACTCATATCCATTCTTGATGTAGAAACCCCGAGTTGCAGACTTAAATTACAGGGCCATAATAACCATGTCCGTTCTGTGTGCTGGGATTCTTGTGGAAAATATTTGGCATCTCTTAGTGATGATCTGGTTAGAGTGTGGACAGTTGGATCTGGCAGCAAAGGGGAATGGATTCACGAGTTGAAATCATCTAAGAACAAATTCAACACATGTGCTTTCCATCCCTTCTATCCTTTACTGGTCATTGGCTGCCATGATACTCTCGAGCTGTGGGACTTCGGAGAGAACAAGACAATGACTCTGCATGCACATGACAACCTTGTATCTTCCTTGGCAGTATCAAATGTTACTGGCTTGGTGGCTTCAGCTAGTCATGACAAGTGTGTCAAGATCTGGAATTCCTAG 2469 0.4249 MSRLNWDAGEMLDAYIYDYLTKRQLHASAKAFQAEGNVSTDPVVIDAPSGFLFEWWSVFWDIYIARTDENRSEAATFYNKSQQSKAREMRKRQEQEHQSPNQNQQMQMQYLLQKHAQQQQHRSGTQLVSGSASSPISNDPSMRQNEATSNAMATKMYEDRLKLPLQRNVLDHAAIKKVDGNVGQLLDPNHAFLLKAVAATTGGHATGQTLLSAPSILQGNLQQIQNQNQQLPGCTQDMNAMMRSQAVVPQGSFIGVHGSNQGGSNLTLKGWPLAGLDQLRSGLLPPNNLMQSPESFNQLSLRQQLMLQTQHNLVSPSVSDFESRRFGVLLNQKMGLGKDGQLNSVGDLIPNVGTPAHIGSPMLPHPDSDMSLKQQVQKSSQQLQQYSTQRTRSSQQSESLQRLEKFGSSSLPRNDQASKSQIAKKRKQASSSGPANSPGTANTTGPSTDSPSTPSSHAAGDGMTVPTVQQNVPSSKSMPMFGTDGLGSLTSAENQLADMDQLMGDGPLVDKVESFLSPDEADPEVRVGKGFSFKEIKHIMASTHKVECCHFSSDGKLFVTGGHDKKASLWCTESFNLKSILEEHAQWITDVRFCPSMLRVATSSADKTVRVWDVDNPGYSLRTFTGHTTTVMSLDFHPSKDDLICSCDNNEIRYWSIKNGSCTGVHKVGVTQIRFQPYLGKLLAAAVDKLISILDVETPSCRLKLQGHNNHVRSVCWDSCGKYLASLSDDLVRVWTVGSGSKGEWIHELKSSKNKFNTCAFHPFYPLLVIGCHDTLELWDFGENKTMTLHAHDNLVSSLAVSNVTGLVASASHDKCVKIWNS 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4455g00004 822 ProSiteProfiles Trp-Asp (WD) repeats profile. 624 665 IPR001680 GO:0005515
Gabi4455g00004 822 SMART Lish 8 40 IPR006594 GO:0005515
Gabi4455g00004 822 MobiDBLite consensus disorder prediction 76 148 - -
Gabi4455g00004 822 SUPERFAMILY WD40 repeat-like 532 821 IPR036322 GO:0005515
Gabi4455g00004 822 CDD WD40 535 821 - -
Gabi4455g00004 822 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gabi4455g00004 822 MobiDBLite consensus disorder prediction 356 476 - -
Gabi4455g00004 822 ProSitePatterns Trp-Asp (WD) repeats signature. 600 614 IPR019775 -
Gabi4455g00004 822 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 581 616 - -
Gabi4455g00004 822 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 624 661 - -
Gabi4455g00004 822 Pfam WD domain, G-beta repeat 578 613 IPR001680 GO:0005515
Gabi4455g00004 822 Pfam WD domain, G-beta repeat 701 735 IPR001680 GO:0005515
Gabi4455g00004 822 Pfam WD domain, G-beta repeat 620 656 IPR001680 GO:0005515
Gabi4455g00004 822 Pfam WD domain, G-beta repeat 542 570 IPR001680 GO:0005515
Gabi4455g00004 822 Pfam WD domain, G-beta repeat 784 821 IPR001680 GO:0005515
Gabi4455g00004 822 MobiDBLite consensus disorder prediction 370 476 - -
Gabi4455g00004 822 SMART WD40_4 532 571 IPR001680 GO:0005515
Gabi4455g00004 822 SMART WD40_4 782 821 IPR001680 GO:0005515
Gabi4455g00004 822 SMART WD40_4 574 613 IPR001680 GO:0005515
Gabi4455g00004 822 SMART WD40_4 698 736 IPR001680 GO:0005515
Gabi4455g00004 822 SMART WD40_4 659 695 IPR001680 GO:0005515
Gabi4455g00004 822 SMART WD40_4 742 780 IPR001680 GO:0005515
Gabi4455g00004 822 SMART WD40_4 617 656 IPR001680 GO:0005515
Gabi4455g00004 822 ProSiteProfiles Trp-Asp (WD) repeats profile. 789 822 IPR001680 GO:0005515
Gabi4455g00004 822 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 616 IPR001680 GO:0005515
Gabi4455g00004 822 MobiDBLite consensus disorder prediction 98 148 - -
Gabi4455g00004 822 ProSitePatterns Trp-Asp (WD) repeats signature. 808 822 IPR019775 -
Gabi4455g00004 822 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 789 822 - -
Gabi4455g00004 822 Gene3D - 520 654 IPR015943 GO:0005515
Gabi4455g00004 822 PANTHER TRANSCRIPTION ACTIVATOR MSS11 409 821 - -
Gabi4455g00004 822 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 570 IPR001680 GO:0005515
Gabi4455g00004 822 Pfam LisH 10 36 IPR006594 GO:0005515
Gabi4455g00004 822 Gene3D - 655 822 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4455g00004 Gabi-Chr4455 21218 29603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4455g00004 618 821 Miscellaneous Gene Families AT5G08390 25.822 1.84e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gabi4455g00004 WD40 0.0016 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4455g00004 - - gmx:100801265 1116.68