Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4455g00002 ATGTGGAACTCGGCGGAGAACGCCTTTGCCAGATCGGCGTCGTTTCGGGAGGAAGGAGAAGAAGAGGAGGCTCTGCGGTGGGCGGCGCTAGAGAGGCTCCCGACGTACAAGCGAGCGCGCAGGGGAATCTTCAAAACTATCATTGGCGACAAGAAAGAGATCGATGTGAGTGACCTTCAGGCACAGGAGCAGCGGCTTCTGTTGGAAAGGCTCGTCGACTTCGTCGACAATGATCCTGAGAGATTCTTTAACCGCATGAGAAGCCGATTCGACGCAGTAGATTTGGAGTTTCCGAAGATTGAAGTTCGATTTCAAAACTTGACTGTTGAGACTTTTGTACACGTCGGAAGCAGAGCCCTGCCAACGATTCCCAATTTCATTTGCAATATGACTGAGGCTCTTTTGAGACAGCTGTGGATATACAAAAAAAAGAGAAGCAAATTGACAATTCTGTCCGACATCAATGGGATAATTAGACCTTCGAGGCTAACGTTGCTATTGGGTCCGCCAAGCTCAGGAAAAACGACACTCCTATTAGCTCTTGCTGGTAGGCTAGGACCTGGTTTGCAGATGTCAGGGAACATTACGTATAATGGACATGGTCTGAATGAGTTTGTTCCTCAGAGAACATCTGCTTATGTCAGCCAACAAGATTGGCATATGGCAGAGATGACCGTGAGGGAAACACTCCAGTTTGCTGGTTGTTGTCAAGGCGTCGGATTTAAATTTGATATGTTGCTGGAACTTGCCCGAAGAGAAAAGAATGCTGGAATAAAACCAGATGAAGATCTTGATATATTCATGAAGTCATTAGCTCTCGGGGGACAGGAAACAAATATTGTGGTGGAGTACATCATGAAGGTTTGGACATATGTGGTGATACATTGGTGGGAGATGAAATGCTCAAGGGCATCTCAGGGGGACAAAAGAAGCGGCTTACAACAGATTGTGTACCAGGGGCCTCGTGAAACTGCTCTTGATTTTTTCAAACAGATGGGATTCAGTTGTCCTGAGCGAAAAAATGTAGCGGACTTCTTACAAGAAGTTACGTCTAAGAAGGACCAAGAGCAGTACTGGTCCGTTCTAGACCGCCCTTACCGGTACGTACCTGTTGGGAAGTTCGCCGAAGCATTTTCTTTGTATCGTGAGGGAAAGATTTTGTCTGAGGAACTAAATATTCCTTTCAATAGACGCCATAATCATCCAGCCGCCTTGGCAACTTGTAGCTATGGCGCGAAAAAGCTTGAACTTCTCAAGACTAACTTCCAGTGGCAGAAGCTTCTTATGAAACGAAATTCATTTATTTATGTTTTTAAATTTGTTCAGCTGCTTTTGGTTGCTCTAATTACAATGACTGTTTTCTTCCGAACAACGATGCACCACAATACAATTGACGATGGAAACTTATATCTGGGTGCACTGTACTTTTCTATGGTTATTATTCTTTTCAATGGTTTTACCGAGGTGTCAATGTTAGTTGCAAAGCTTCCAGTTCTTTACAAGCACAGGGACTTGCACTTCTATCCTAGCTGGGCATATACAATTCCTTCTTGGTTCCTTAGTATCCCAATTTCCCTCATGGAAGCTGGATGCTGGGTGGCAGTCTCATACTACGCAATTGGATATGATCCTGCAATTACTAGATTTTTTCAGCAGCTCTTGCTTTATTTTTTTCTGCACCAGATGTCTATAGGTCTATTTCGATTGATAGGATCCTTGGGCCGGAATATGATAGTAGCCAATACCTTTGGTTCCTTTGCCATGTTGGTTGTAATGGCTCTTGGTGGATATATAATTTCAAGAGACCGTATACCAAGCTGGTGGATATGGGGTTTTTGGATTTCTCCTTTGATGTATGCACAAAATTCAGCTTCTGTAAATGAGTTTCTTGGACATTCCTGGAATAAGAAAGCTGGAAATCAGACTACCTATCCATTGGGTATGGCAGTATTAAAAGAGCGGAGTTTGTATCCAGAGAGTTATTGGTACTGGATTGGTCTTGGTGCAATGGTTGGATACACAATTTTGTTCAACACACTATTTACGATCTTCTTAGCTTACCTTAATCCCGTGGGAAGGCAACAAGCTGTAGTTTCAAAGGATGAGCTGCAAGAAAGAGAGAATAGAAGAAAAGGTGAAAGTGTTGTCATTGAGCTGAGAGAGTATTTGCAGCATTCGGCATCAAGTGGAAAGCATTTTAAGCAAAGAGGAATGGTTCTCCCATTTCAACCACTTTCCTTGGCTTTCAGTAATATCAATTACTATGTGGATGTACCTTTGGAATTGAAACAACAAGGGATATTAGAAGACAGGCTGCAGCTGCTTGTTAATGTTACTGGAGCTTTTAGGCCTGGTGTGTTGACAGCATTGGTTGGAGTAAGTGGTGCTGGAAAAACCACGCTGATGGATGTGTTAGCAGGAAGGAAAACTGGCGGAATCATAGAAGGGGGCACATTTATATCTGGTTATCCCAAAAGACAAGATACTTTTGCAAGGATTTCTGGTTATTGTGAGCAGACTGATGTTCATTCCCCTTGCTTGACTGTCTGGGAATCCTTACTGTTCTCTGCTTGGCTTCGATTATCTTCAGATGTTGACTTGGAGACACAAAAGGCCTTCGTTGAGGAGATAATGGAGCTTGTGGAGCTCACTCCGTTAAGTGGAGCACTAGTGGGTCTACCTGGAATTGATGGTCTGTCAACAGAACAACGAAAAAGATTAACTATAGCTGTGGAACTGGTTGCCAACCCTTCTATAGTCTTCATGGATGAGCCCACATCCGGATTGGATGCCCGGGCTGCAGCCATTGTGATGAGAACTGTGAGGAATATAGTAAATACTGGGCGAACAATTGTGTGCACGATCCATCAGCCTAGCATAGACATATTTGAATCCTTTGACGAGCTTCTATTTATGAAGCGGGGAGGAGAGCTCATATATGCTGGTCCGCTTGGCCCTAAATCTATTGAACTAATCAGTTATTTCGAGGCAATCGAAGGAGTTCCAAAGATCAGGCCTGGATATAACCCTGCTACATGGATGCTGGAGGTTACTTCTTCAGCAGAAGAAAACCGTCTGGGAGTGGACTTTGCAGAAATCTATCGAAGATCAAATTTATATCAATGTAACCAAGAATTGGTTGAAAGCTTGAGCAGGCCAAGCAGTAATTCAAAAGAATTGCATTTTCCAAGCAAGTATTGTCGGTCATCTTTTGAGCAGTTCCTAACTTGTCTTTGGAAGCAAAATCTATCTTACTGGCGTAACCCGCAGTACACTGCTGTTCGCTTCTTCTACACTGTCATCATCTCATTGATGCTTGGGACGATATGCTGGAGATTTGGTGCTAAAAGGGAGACGCAGAAAGATCTATTCAATGCCATGGGATCTATGTATTCGGCAGTCCTCTTCATTGGTATAACAAATGCCACAGCGGTTCAGCCTGTTGTTTCTGTGGAAAGATTTGTTTCGTATAGAGAAAGAGCTGCAGGGATGTATTCGGCTTTATCATTTGCATTTGCTCAGGTCATGATTGAGTTTCCTTATGTTTTTGGACAGGCTATGATATACTCCTCAATATTCTATTCCATGAGTTCCTTTGTCTGGACTGTTGATAGGTTCATTTGGTACCTGTTCTTCATGTATTTTACTATGTTATATTTTACCTTCTATGGAATGATGACAACGGCTGTCACACCAAATCATAACGTTGCTGCCATAATCGCTGCTCCATTTTATATGTTGTGGAACCTTTTCAGTGGTTTTATGATTCCTCATAAGAGAATCCCAATTTGGTGGAGATGGTATTACTGGGCAAACCCCGTAGCCTGGAGTCTGTATGGTCTCCTAACTTCACAGTATGGTGATGATAATAAGTTGGTGAAGCTATCTGATGGAAACTTGATGACTATAAGGCAAGTACTCAAAGACGTGTTTGGGTACAGGCATGATTTCTTGTATGTTGCTGCTACTATGGTAGCCGGCTTCTGCATATTTTTTGCAATAATATTTGCCTTTGCAATTAAATCCTTCAATTTCCAAAGGAGATGA 4047 0.4282 MWNSAENAFARSASFREEGEEEEALRWAALERLPTYKRARRGIFKTIIGDKKEIDVSDLQAQEQRLLLERLVDFVDNDPERFFNRMRSRFDAVDLEFPKIEVRFQNLTVETFVHVGSRALPTIPNFICNMTEALLRQLWIYKKKRSKLTILSDINGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGPGLQMSGNITYNGHGLNEFVPQRTSAYVSQQDWHMAEMTVRETLQFAGCCQGVGFKFDMLLELARREKNAGIKPDEDLDIFMKSLALGGQETNIVVEYIMKVWTYVVIHWWEMKCSRASQGDKRSGLQQIVYQGPRETALDFFKQMGFSCPERKNVADFLQEVTSKKDQEQYWSVLDRPYRYVPVGKFAEAFSLYREGKILSEELNIPFNRRHNHPAALATCSYGAKKLELLKTNFQWQKLLMKRNSFIYVFKFVQLLLVALITMTVFFRTTMHHNTIDDGNLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTIPSWFLSIPISLMEAGCWVAVSYYAIGYDPAITRFFQQLLLYFFLHQMSIGLFRLIGSLGRNMIVANTFGSFAMLVVMALGGYIISRDRIPSWWIWGFWISPLMYAQNSASVNEFLGHSWNKKAGNQTTYPLGMAVLKERSLYPESYWYWIGLGAMVGYTILFNTLFTIFLAYLNPVGRQQAVVSKDELQERENRRKGESVVIELREYLQHSASSGKHFKQRGMVLPFQPLSLAFSNINYYVDVPLELKQQGILEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGGTFISGYPKRQDTFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDLETQKAFVEEIMELVELTPLSGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSIELISYFEAIEGVPKIRPGYNPATWMLEVTSSAEENRLGVDFAEIYRRSNLYQCNQELVESLSRPSSNSKELHFPSKYCRSSFEQFLTCLWKQNLSYWRNPQYTAVRFFYTVIISLMLGTICWRFGAKRETQKDLFNAMGSMYSAVLFIGITNATAVQPVVSVERFVSYRERAAGMYSALSFAFAQVMIEFPYVFGQAMIYSSIFYSMSSFVWTVDRFIWYLFFMYFTMLYFTFYGMMTTAVTPNHNVAAIIAAPFYMLWNLFSGFMIPHKRIPIWWRWYYWANPVAWSLYGLLTSQYGDDNKLVKLSDGNLMTIRQVLKDVFGYRHDFLYVAATMVAGFCIFFAIIFAFAIKSFNFQRR 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4455g00002 1348 Gene3D - 140 309 IPR027417 -
Gabi4455g00002 1348 Pfam Plant PDR ABC transporter associated 634 698 IPR013581 -
Gabi4455g00002 1348 Gene3D - 760 987 IPR027417 -
Gabi4455g00002 1348 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 747 999 IPR003439 GO:0005524
Gabi4455g00002 1348 Pfam ABC transporter 776 927 IPR003439 GO:0005524
Gabi4455g00002 1348 Pfam ABC-2 type transporter 1072 1285 IPR013525 GO:0016020|GO:0140359
Gabi4455g00002 1348 Pfam ABC-2 type transporter 418 629 IPR013525 GO:0016020|GO:0140359
Gabi4455g00002 1348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 252 IPR027417 -
Gabi4455g00002 1348 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 4 289 - -
Gabi4455g00002 1348 SMART AAA_5 160 486 IPR003593 GO:0016887
Gabi4455g00002 1348 SMART AAA_5 784 976 IPR003593 GO:0016887
Gabi4455g00002 1348 Pfam ABC transporter 151 281 IPR003439 GO:0005524
Gabi4455g00002 1348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 761 983 IPR027417 -
Gabi4455g00002 1348 FunFam ABC transporter G family member 34 761 993 - -
Gabi4455g00002 1348 Pfam ABC-transporter N-terminal 76 126 IPR029481 -
Gabi4455g00002 1348 CDD ABCG_PDR_domain2 744 982 IPR034003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4455g00002 Gabi-Chr4455 5183 15772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4455g00002 772 959 Calmodulin-binding Proteins AT2G36910 25.521 6.45e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4455g00002 K08711 - gmx:100815410 1903.64