Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4455g00001 ATGTGGAACTCGGCGGAGAACGCCTTTGCCAGATCGGCGTCGTTTCGGGAGGAAGGAGAAGAAGAGGAGGCTCTGCGGTGGGCGGCGCTAGAGAGGCTCCCGACGTACAAGCGAGCGCGCAGGGGAATCTTCAAAACTATCATTGGCGACAAGAAAGAGATCGATGTGAGTGACCTTCAGGCACAGGAGCAGCGGCTTCTGTTGGAAAGGCTCGTCGACTTCGTCGACAATGATCCTGAGAGATTCTTTAACCGCATGAGAAGCCGATTCGACGCAGTAGATTTGGAGTTTCCGAAGATTGAAGTTCGATTTCAAAACTTGACTGTTGAGACTTTTGTACACGTCGGAAGCAGAGCCCTGCCAACGATTCCCAATTTCATTTGCAATATGACTGAGGCTCTTTTGAGACAGCTGTGGATATACAAAAAAAAGAGAAGCAAATTGACAATTCTGTCCGACATCAATGGGATAATTAGACCTTCGAGGCTAACGTTGCTATTGGGTCCGCCAAGCTCAGGAAAAACGACACTCCTATTAGCTCTTGCTGGTAGGCTAGGACCTGGTTTGCAGATGTCAGGGAACATTACGTATAATGGACATGGTCTGAATGAGTTTGTTCCTCAGAGAACATCTGCTTATGTCAGCCAACAAGATTGGCATATGGCAGAGATGACCGTGAGGGAAACACTCCAGTTTGCTGGTTGTTGTCAAGGCGTCGGATTTAAATTTGATATGTTGCTGGAACTTGCCCGAAGAGAAAAGAATGCTGGAATAAAACCAGATGAAGATCTTGATATATTCATGAAGTCATTAGCTCTCGGGGGACAGGAAACAAATATTGTGGTGGAGTACATCATGAAGATATTAGGTTTGGACATATGTGGTGATACATTGGTGGGAGATGAAATGCTCAAGGGCATCTCAGGGGGACAAAAGAAGCGGCTTACAACAGGTGAATTACTAATTGGTCCAGCAAGAGTGTTGTTCATGGATGAGATATCAACTGGTCTTGATAGCTCAACTACTTATCAAATCATCAGATATCTTAGGCATTCAACCCATGCACTTGATGCAACCACAATTATATCTCTTCTTCAACCAGCTCCTGAGACCTATGAGTTGTTTGATGATGTTATTCTTTTGTGCGAGGGTCAGATTGTGTACCAGGGGCCTCGTGAAACTGCTCTTGATTTTTTCAAACAGATGGGATTCAGTTGTCCTGAGCGAAAAAATGTAGCGGACTTCTTACAAGAAGTTACGTCTAAGAAGGACCAAGAGCAGTACTGGTCCGTTCTAGACCGCCCTTACCGGTACGTACCTGTTGGGAAGTTCGCCGAAGCATTTTCTTTGTATCGTGAGGGAAAGATTTTGTCTGAGGAACTAAATATTCCTTTCAATAGACGCCATAATCATCCAGCCGCCTTGGCAACTTGTAGCTATGGCGCGAAAAAGCTTGAACTTCTCAAGACTAACTTCCAGTGGCAGAAGCTTCTTATGAAACGAAATTCATTTATTTATGTTTTTAAATTTGTTCAGCTGCTTTTGGTTGCTCTAATTACAATGACTGTTTTCTTCCGAACAACGATGCACCACAATACAATTGACGATGGAAACTTATATCTGGGTGCACTGTACTTTTCTATGGTTATTATTCTTTTCAATGGTTTTACCGAGGTGTCAATGTTAGTTGCAAAGCTTCCAGTTCTTTACAAGCACAGGGACTTGCACTTCTATCCTAGCTGGGCATATACAATTCCTTCTTGGTTCCTTAGTATCCCAATTTCCCTCATGGAAGCTGGATGCTGGGTGGCAGTCTCATACTACGCAATTGGATATGATCCTGCAATTACTAGATTTTTTCAGCAGCTCTTGCTTTATTTTTTTCTGCACCAGATGTCTATAGGTCTATTTCGATTGATAGGATCCTTGGGCCGGAATATGATAGTAGCCAATACCTTTGGTTCCTTTGCCATGTTGGTTGTAATGGCTCTTGGTGGATATATAATTTCAAGAGACCGTATACCAAGCTGGTGGATATGGGGTTTTTGGATTTCTCCTTTGATGTATGCACAAAATTCAGCTTCTGTAAATGAGTTTCTTGGACATTCCTGGAATAAGAAAGCTGGAAATCAGACTACCTATCCATTGGGTATGGCAGTATTAAAAGAGCGGAGTTTGTATCCAGAGAGTTATTGGTACTGGATTGGTCTTGGTGCAATGGTTGGATACACAATTTTGTTCAACACACTATTTACGATCTTCTTAGCTTACCTTAATCCCGTGGGAAGGCAACAAGCTGTAGTTTCAAAGGATGAGCTGCAAGAAAGAGAGAATAGAAGAAAAGGTGAAAGTGTTGTCATTGAGCTGAGAGAGTATTTGCAGCATTCGGCATCAAGTGGAAAGCATTTTAAGCAAAGAGGAATGGTTCTCCCATTTCAACCACTTTCCTTGGCTTTCAGTAATATCAATTACTATGTGGATGTACCTTTGGAATTGAAACAACAAGGGATATTAGAAGACAGGCTGCAGCTGCTTGTTAATGTTACTGGAGCTTTTAGGCCTGGTGTGTTGACAGCATTGGTTGGAGTAAGTGGTGCTGGAAAAACCACGCTGATGGATGTGTTAGCAGGAAGGAAAACTGGCGGAATCATAGAAGGGGGCACATTTATATCTGGTTATCCCAAAAGACAAGATACTTTTGCAAGGATTTCTGGTTATTGTGAGCAGACTGATGTTCATTCCCCTTGCTTGACTGTCTGGGAATCCTTACTGTTCTCTGCTTGGCTTCGATTATCTTCAGATGTTGACTTGGAGACACAAAAGGCCTTCGTTGAGGAGATAATGGAGCTTGTGGAGCTCACTCCGTTAAGTGGAGCACTAGTGGGTCTACCTGGAATTGATGGTCTGTCAACAGAACAACGAAAAAGATTAACTATAGCTGTGGAACTGGTTGCCAACCCTTCTATAGTCTTCATGGATGAGCCCACATCCGGATTGGATGCCCGGGCTGCAGCCATTGTGATGAGAACTGTGAGGAATATAGTAAATACTGGGCGAACAATTGTGTGCACGATCCATCAGCCTAGCATAGACATATTTGAATCCTTTGACGAGCTTCTATTTATGAAGCGGGGAGGAGAGCTCATATATGCTGGTCCGCTTGGCCCTAAATCTATTGAACTAATCAGTTATTTCGAGGCAATCGAAGGAGTTCCAAAGATCAGGCCTGGATATAACCCTGCTACATGGATGCTGGAGGTTACTTCTTCAGCAGAAGAAAACCGTCTGGGAGTGGACTTTGCAGAAATCTATCGAAGATCAAATTTATATCAATGTAACCAAGAATTGGTTGAAAGCTTGAGCAGGCCAAGCAGTAATTCAAAAGAATTGCATTTTCCAAGCAAGTATTGTCGGTCATCTTTTGAGCAGTTCCTAACTTGTCTTTGGAAGCAAAATCTATCTTACTGGCGTAACCCGCAGTACACTGCTGTTCGCTTCTTCTACACTGTCATCATCTCATTGATGCTTGGGACGATATGCTGGAGATTTGGTGCTAAAAGGGAGACGCAGAAAGATCTATTCAATGCCATGGGATCTATGTATTCGGCAGTCCTCTTCATTGGTATAACAAATGCCACAGCGGTTCAGCCTGTTGTTTCTGTGGAAAGATTTGTTTCGTATAGAGAAAGAGCTGCAGGGATGTATTCGGCTTTATCATTTGCATTTGCTCAGGTCATGATTGAGTTTCCTTATGTTTTTGGACAGGCTATGATATACTCCTCAATATTCTATTCCATGAGTTCCTTTGTCTGGACTGTTGATAGGTTCATTTGGTACCTGTTCTTCATGTATTTTACTATGTTATATTTTACCTTCTATGGAATGATGACAACGGCTGTCACACCAAATCATAACGTTGCTGCCATAATCGCTGCTCCATTTTATATGTTGTGGAACCTTTTCAGTGGTTTTATGATTCCTCATAAGAGAATCCCAATTTGGTGGAGATGGTATTACTGGGCAAACCCCGTAGCCTGGAGTCTGTATGGTCTCCTAACTTCACAGTATGGTGATGATAATAAGTTGGTGAAGCTATCTGATGGAAACTTGATGACTATAAGGCAAGTACTCAAAGACGTGTTTGGGTACAGGCATGATTTCTTGTATGTTGCTGCTACTATGGTAGCCGGCTTCTGCATATTTTTTGCAATAATATTTGCCTTTGCAATTAAATCCTTCAATTTCCAAAGGAGATGA 4257 0.4261 MWNSAENAFARSASFREEGEEEEALRWAALERLPTYKRARRGIFKTIIGDKKEIDVSDLQAQEQRLLLERLVDFVDNDPERFFNRMRSRFDAVDLEFPKIEVRFQNLTVETFVHVGSRALPTIPNFICNMTEALLRQLWIYKKKRSKLTILSDINGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGPGLQMSGNITYNGHGLNEFVPQRTSAYVSQQDWHMAEMTVRETLQFAGCCQGVGFKFDMLLELARREKNAGIKPDEDLDIFMKSLALGGQETNIVVEYIMKILGLDICGDTLVGDEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLRHSTHALDATTIISLLQPAPETYELFDDVILLCEGQIVYQGPRETALDFFKQMGFSCPERKNVADFLQEVTSKKDQEQYWSVLDRPYRYVPVGKFAEAFSLYREGKILSEELNIPFNRRHNHPAALATCSYGAKKLELLKTNFQWQKLLMKRNSFIYVFKFVQLLLVALITMTVFFRTTMHHNTIDDGNLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTIPSWFLSIPISLMEAGCWVAVSYYAIGYDPAITRFFQQLLLYFFLHQMSIGLFRLIGSLGRNMIVANTFGSFAMLVVMALGGYIISRDRIPSWWIWGFWISPLMYAQNSASVNEFLGHSWNKKAGNQTTYPLGMAVLKERSLYPESYWYWIGLGAMVGYTILFNTLFTIFLAYLNPVGRQQAVVSKDELQERENRRKGESVVIELREYLQHSASSGKHFKQRGMVLPFQPLSLAFSNINYYVDVPLELKQQGILEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGGTFISGYPKRQDTFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDLETQKAFVEEIMELVELTPLSGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSIELISYFEAIEGVPKIRPGYNPATWMLEVTSSAEENRLGVDFAEIYRRSNLYQCNQELVESLSRPSSNSKELHFPSKYCRSSFEQFLTCLWKQNLSYWRNPQYTAVRFFYTVIISLMLGTICWRFGAKRETQKDLFNAMGSMYSAVLFIGITNATAVQPVVSVERFVSYRERAAGMYSALSFAFAQVMIEFPYVFGQAMIYSSIFYSMSSFVWTVDRFIWYLFFMYFTMLYFTFYGMMTTAVTPNHNVAAIIAAPFYMLWNLFSGFMIPHKRIPIWWRWYYWANPVAWSLYGLLTSQYGDDNKLVKLSDGNLMTIRQVLKDVFGYRHDFLYVAATMVAGFCIFFAIIFAFAIKSFNFQRR 1418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4455g00001 1418 Gene3D - 136 433 IPR027417 -
Gabi4455g00001 1418 Pfam ABC transporter 846 997 IPR003439 GO:0005524
Gabi4455g00001 1418 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 4 1418 - -
Gabi4455g00001 1418 FunFam ABC transporter G family member 34 138 442 - -
Gabi4455g00001 1418 Pfam Plant PDR ABC transporter associated 704 768 IPR013581 -
Gabi4455g00001 1418 Gene3D - 830 1057 IPR027417 -
Gabi4455g00001 1418 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 135 408 IPR003439 GO:0005524
Gabi4455g00001 1418 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 817 1069 IPR003439 GO:0005524
Gabi4455g00001 1418 Pfam ABC-transporter N-terminal 76 126 IPR029481 -
Gabi4455g00001 1418 CDD ABCG_PDR_domain2 814 1052 IPR034003 -
Gabi4455g00001 1418 SMART AAA_5 160 385 IPR003593 GO:0016887
Gabi4455g00001 1418 SMART AAA_5 854 1046 IPR003593 GO:0016887
Gabi4455g00001 1418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 831 1053 IPR027417 -
Gabi4455g00001 1418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 408 IPR027417 -
Gabi4455g00001 1418 Pfam ABC transporter 151 333 IPR003439 GO:0005524
Gabi4455g00001 1418 Pfam ABC-2 type transporter 366 419 IPR043926 GO:0140359
Gabi4455g00001 1418 Pfam ABC-2 type transporter 488 699 IPR013525 GO:0016020|GO:0140359
Gabi4455g00001 1418 Pfam ABC-2 type transporter 1142 1355 IPR013525 GO:0016020|GO:0140359
Gabi4455g00001 1418 FunFam ABC transporter G family member 34 831 1063 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4455g00001 Gabi-Chr4455 5182 15772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4455g00001 842 1029 Calmodulin-binding Proteins AT2G36910 25.521 6.18e-06 49.3