Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4454g00070 ATGGCCTCCTCCCAGTCCCAGCATCGCTGTGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGTCAGGAGGTTGGCCCTGTAGTCTCGTTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGTTTCTGTGAGTATAAGGATGAAGAGACGGCTTTAAGTGCTCGTCGAAATCTCCAGGGTTATGAAATAAATGGTCGGCAATTACGTGTTGACTTCGCTGAAAATGATAAAGGGACTGATAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGAATGACAGCAAATGTTGACCCTCAGAAACAAGGAGGCAGCCCAGCCGTCCATGGAGAAGCTGTTCAACATCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACAGAAGCTCTAGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATGGTTTGCAGAATCAGTCAGCCTTGGCACGCGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGAAGTCAGCTGACTGAGATTATCTCTGAGCTCAAGGGAATGGCTACACACAACAAGGAACTGGCTCACCAACTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCCCAAGTGTTACAAATGCCAAACCTTAGGCTGGTCTCAGATGAAACCTCACAGTCAAAAAGTGAAGGCCAGCTAAGTCAGCCAACATTGGTTCAAAATCTGTCTGGCCTACCTCCTCATGGACAGAGCAATTTGAACTCTGGTTTGAAGCCTTATGTTCAAGAAGGCCAAATCAGCACCATACCTCATAATCCTTTGGCTCCTAGTCAATTAACTGCACATCCAAAGCATCCATTGCAGCCTCGAATTCCGCTTCATCAACATCCTAGCAACCATGCTATGCATCTGGGAACATTATCAGGGCATTCTAGTTTAATGCTTCCTGGTTTGCGTCCCCAGTCTGTGGGCAGTATACCTGTTAGACCTCCAATTCAACCGGCAACTTCAACTGCTCTGAACCAGCAAATGCATGCCTCCTTGCAACAGCAGCATTCAATACATATTGGAAGCTCAACTGTAGGACATAATGTCCCGATGGTTCATCCAGATGCAAGCTTTCAGCCTGGCCCCTCCATATCATCAGGTATTTCTCAGTTAATTAGTAAGGAAGGTGATAGATCTTCTAAAGTTCTTGAGGATTTAAATTGGGCCAAGAGAAGTAGTAGTGCATATTCAAACATGCCTTTGGGAGTAGAGAAAACAAACATGGTTCATAATTCTTCAGAATCTTTTACTCGCCAGTCAAAGCTCATGAAATTGAATGATGGAAGGAGGATCTCTCTTTCTGCTGGGATTTCAGACGTGCCTGTTACCAATGGATCATCCCATGTTCTTGGGAGTAGCTCATTACCTGTACTTGCAACTCATAAAACCGAAGTGCAACATTCTGAGCAACAATCTTCTCAGCCCCAGCTTCCACCTGATAAGGAGTCTGTTTTACTGCAACAAGTGTTGAATCTAACACCAGAGAAATTAAGTACCTTATCACCAGAGCAGCAGCAGCAGGTCATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATGCAGCCCTCATGA 1671 0.4542 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTANVDPQKQGGSPAVHGEAVQHQPIGLHIAITAAAVMTEALGGAQFGIQSNQNGLQNQSALARDPLTLHLAKMSRSQLTEIISELKGMATHNKELAHQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDETSQSKSEGQLSQPTLVQNLSGLPPHGQSNLNSGLKPYVQEGQISTIPHNPLAPSQLTAHPKHPLQPRIPLHQHPSNHAMHLGTLSGHSSLMLPGLRPQSVGSIPVRPPIQPATSTALNQQMHASLQQQHSIHIGSSTVGHNVPMVHPDASFQPGPSISSGISQLISKEGDRSSKVLEDLNWAKRSSSAYSNMPLGVEKTNMVHNSSESFTRQSKLMKLNDGRRISLSAGISDVPVTNGSSHVLGSSSLPVLATHKTEVQHSEQQSSQPQLPPDKESVLLQQVLNLTPEKLSTLSPEQQQQVIQLQQALRRDQMQPS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4454g00070 556 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Gabi4454g00070 556 MobiDBLite consensus disorder prediction 85 121 - -
Gabi4454g00070 556 SUPERFAMILY RNA-binding domain, RBD 5 105 IPR035979 GO:0003676
Gabi4454g00070 556 Pfam Hinge domain of cleavage stimulation factor subunit 2 163 230 IPR025742 -
Gabi4454g00070 556 CDD RRM_CSTF2_RNA15_like 9 85 - -
Gabi4454g00070 556 Gene3D - 1 120 IPR012677 -
Gabi4454g00070 556 Pfam Transcription termination and cleavage factor C-terminal 518 550 IPR026896 GO:0031124
Gabi4454g00070 556 Gene3D - 511 555 IPR038192 -
Gabi4454g00070 556 FunFam Cleavage stimulating factor 64 2 118 - -
Gabi4454g00070 556 SMART rrm1_1 10 83 IPR000504 GO:0003723
Gabi4454g00070 556 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 552 - -
Gabi4454g00070 556 FunFam Cleavage stimulating factor 64 157 232 - -
Gabi4454g00070 556 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Gabi4454g00070 556 Gene3D - 151 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4454g00070 Gabi-Chr4454 686369 695786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4454g00070 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.53e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4454g00070 K14407 - gmx:100794399 828.55