Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4454g00069 ATGGGCGAAGCTTCGGAATCTGCTTCTGCTGAGTGTTTTAGCAACGCGATGGCGTCTATGCCGGGTTTTCGCTTCCATCCCACGGATGAGGAACTGGTCATGTACTATCTGAAGCGGAAGATTTGCGGGAAGAAGCCGAAGTTCAACGTGATTCGCGAAACTGATGTGTACAAGTGTGATCCTGAGGATTTGCCTGGGCAATCTGTACTGAAAACTGGAGATAGGCAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCCAATGGTGGTAGGTCTAACCGAGCAACAAGACATGGGTACTGGAAAGCAACAGGAAAGGATCGTAATGTGACATGCAATTCACGGGCAGTTGGAGTGAAAAAGACCCTGGTTTTCTATAGAGGTAGAGCACCTAGTGGTGAGCGGACTGATTGGGTTATGCATGAATACACCATGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAGGACTATTATGCACTTTACAAGGTTTTCAAGAAAAGTGGACCTGGTCCTAAAAATGGAGAACAATATGGTGCACCATTTAAAGAAGAAGAGTGGGCAGAAGATGGCCTCGTGGATTTCAATATTAACTCAGCTGATCGGGAGGCTCAAAATATCGTTACTGATGATGTTAATGATCAGCTGCAGCCTTTGTTTGATGATGAAATTGAGGAAATGATTAAAGGAATTTTGGATGATGATCTTCTCCTTGACCAGCAACATGTGAATAATGGTTATCCTGACTTTCCTCAGGTTGTTACTGAAGAAACACAAAGTACCGTTGTGGATCAATTCCCCGAGGCCGTGATATTCCCTGAGTCAAGTGGAATCTTTCACTCTAGCAGTCAGCATTATGATGTTCAGTCCAGCTTTGACTTTCAGTCAGTTACTCCTCACTTCCATGTGTCTGAAGCACCTGAGGTCACTTCTGCTCCCAACATTCAAAGAGAGGAGTTTTACTTTGAAGAGGAAGGCTTCTTGGAAATTAATGATCTCATTGTTACTGAACCTGTATCGACAACTATGGAAAAGCCTGTGGAGAACCTGCAGTATGAAGATGGTTTAAGTGAACTTGATCTGTACCAAGATGCGGAGATGTTTCTTCGGGACTTGGGGCCAATTACCTACGAGACTGTTTCACATGAATATATGAATACCCTTGGCAGCAATGTTGAAAATCAAAATTACGAGTTGTTGCCCAATCCAGAGGAGGCCAATCAAACTGATGGTGAATTCTGGATGCATGGTGAAAGAAACACCCAGGGTTCAGCAGAAGGCTTTATTGATTCTTTCTCTCTACCAACCCCAGGTGTTGTATGTGAACCTTCCAGCTTTCCTACTGAAGGCTATGAAAATCAAAGTAGCAATGTAGAAGATGTTACTGCTACAAGTAGATTCTCCTCTGCTCTCTGGGCCTTTGTTGAATCAATACCTACCACTCCTGCATCAGCTGCTGAAAATGCTTTGGTGAACCGAGCTTTGAATCGAATGTCTAGTTTCAGCAGGGTGAAGATGAAGAACACAAATGTTGTCGCAGGTAAAGACACTGCAACTGTGCAGAGAGCGGGCAGAAAGGGTTTTTCATTCCTTTTCTTCCCTATTCTTATTGCTTTTTGTGCTTTCTTGTGGGTTTCTATTGGAACTTTAAGATTATTAGAGAGATGCATCTCTCCTTGA 1686 0.4336 MGEASESASAECFSNAMASMPGFRFHPTDEELVMYYLKRKICGKKPKFNVIRETDVYKCDPEDLPGQSVLKTGDRQWFFFCHRDRKYPNGGRSNRATRHGYWKATGKDRNVTCNSRAVGVKKTLVFYRGRAPSGERTDWVMHEYTMDEEELKRCQGVKDYYALYKVFKKSGPGPKNGEQYGAPFKEEEWAEDGLVDFNINSADREAQNIVTDDVNDQLQPLFDDEIEEMIKGILDDDLLLDQQHVNNGYPDFPQVVTEETQSTVVDQFPEAVIFPESSGIFHSSSQHYDVQSSFDFQSVTPHFHVSEAPEVTSAPNIQREEFYFEEEGFLEINDLIVTEPVSTTMEKPVENLQYEDGLSELDLYQDAEMFLRDLGPITYETVSHEYMNTLGSNVENQNYELLPNPEEANQTDGEFWMHGERNTQGSAEGFIDSFSLPTPGVVCEPSSFPTEGYENQSSNVEDVTATSRFSSALWAFVESIPTTPASAAENALVNRALNRMSSFSRVKMKNTNVVAGKDTATVQRAGRKGFSFLFFPILIAFCAFLWVSIGTLRLLERCISP 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4454g00069 561 FunFam Nac domain-containing protein 86 28 172 - -
Gabi4454g00069 561 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Gabi4454g00069 561 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Gabi4454g00069 561 SUPERFAMILY NAC domain 16 169 IPR036093 GO:0003677|GO:0006355
Gabi4454g00069 561 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Gabi4454g00069 561 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4454g00069 Gabi-Chr4454 671566 675828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4454g00069 5 559 NAC Transcription Factor Family AT1G34190 43.836 8.63e-137 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4454g00069 NAM 8.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4454g00069 - - gmx:100794925 852.047