Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4454g00053 ATGCTGCAACTTCTCAATCTGTCTTCCACCAATGTCTCTGGCTCCATTCCACTCTCTTTTGGTCAGCTCTCCCATCTTCAACTGCTTGATCTCTCCTCAAACTCTCTCACTGGTTCCATTCCCGCTGAACTTGGAAGGCTCTCTTCACTTCAATTCCTTTTCTTGAACTCCAACAGATTCACCGGAAGCATTCCTCAAAATCTTGCTAATCTTACTTCACTTGAAGTTCTTTGCCTCCAAGACAATCTTCTAAACGGGTCAATCCCATCACAGTTTGGCTCTTTGACATCACTGCAGCAGTTTCGGATAGGGGGTAATCCACATCTCACAGGACAAATCCCATCACAGTTAGGCCTACTCACCAATCTCACCACATTTGGTGCAGCTGCCACTGGACTTTCTGGTGTCATTCCCTCTTCATTTGGTAACTTGGTCAATCTCCAAACGTTAGCTCTTTATGATACTGCAATTTCTGGTTCAATACCACCAGAACTTGGGTTGTGTTCCGAGTTGAGAAATCTGTATATACACATGAATAACTTCACTGGCTCTATCCCTCCTCAATTGAGTAAGTTGCAAAAGCTTACTAGCTTGCTTCTTTGGGGCAATGCATTGTCTGGGCCAATCCCAGCTGAGCTTTCTAACTGTTCATCACTTGTTATATTTGATGTCTCTTCTAATGACCTCTCTGGTGAAATACCTGGGGACTTTGGGAAGCTAGTGGTTCTGGAACAGCTGCATCTATCAGACAATTCTCTCACAGGTAAAATACCATGGCAATTGAGCAACTGCACGAGCCTTGCCACTGTTCAGCTTGACAAGAATCAATTATCAGGTACAATTCCATGGCAGGTTGGCAATTTGAAGTTTTTGCAGAGTTTTTTCTTGTGGGGTAATTTAGTCTCTGGAACCATACCATCCTCTTTTGGAAACTGCACAGAACTATATGCACTTGACCTTTCAAGGAACAAGCTAACAGGTTCTATTCCAGAAGAAATTTTCAGCTTGAAGAAGCTGAGTAAGCTTCTGCTTCTTGGGAACTCTTTAACAGGAAGGTTGCCACCAAGTGTTGCAAATTGCCAATCTTTGGTGAGGCTGAGGGTTGGAGAAAACCAGCTTTCAGGACAGATTCCTAAAGAGATAGGCCAATTGCAGAATCTGGTGTTTCTTGACTTGTACATGAATAATTTCTCTGGAAGCTTACCAGTGGAGATAGCCAACATCACAGTTCTTGAGCTTTTAGATGTGCACAACAATTACCTAACTGGGGAAATTCCATCCATGATTGGGGAACTTGAAAACTTGGAGCAGCTTGATCTCAGTCGAAACAGTTTGACAGGTGCAATTCCTTGGAGCTTTGGAAACTTGAGTTATTTGAACAAACTCATCCTCAACAATAATTTACTGACAGGATCAATCCCAAAATCTATTAGGAATTTGCAGAAGTTAACTCTACTTGATTTGAGTTTCAACAGCCTCTCTGGTGGCATACCCTCAGAGATTGGTTATGTTACAAGCTTAACCATCAGTTTGGACTTGAGCTCAAATGCATTTGCAGGAGAACTTCCAGATTCAATGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCTCACAACATGCTTCATGGTGGAATTAAGGTTTTGGGTTCTCTCACTAGTCTTACTTCCCTTAATATCTCCTGCAATAACTTCTCAGGTCCTATCCCAGTAACTCCATTCTTCAGAACTATATCTTCTAGTTCCTATCTTCCGAACCCCCATCTATGTCAGTCCAATGATGGGAATACATGTTCTTCAAGTCTGATTCGAAAAAATGGTTTAAAATCTGCAAAAACCATAGCTTTGATCATGATAGTTCTAGCCTCGGTTACTATAATTGTCATCGCATCCTGGATTCTAGTAACTCGGAACCACAGATATAAGGTTGAAAAAACTTTAGGGATATCAGCTTCCACATCAGGAGCTGAGGATTTCTCTTATCCTTGGACTTTCATACCATTTCAAAAACTGAACTTCAGCATAGATAATATCTTGCATTGCTTGAAGGATGAAAATGTGATTGGAAAGGGTTGCTCTGGTGTTGTTTACAAGGCTGAGATGCCTAATGGGGAGTTGATAGCAGTGAAGAAGCTTTGGAAAACAAACAAAGAAGATGAAATGGTTGATTCTTTTGCTGCAGAGATTCAGATTCTTGGGTACATTCGGCATAGGAATATTGTGAGGCTCCTAGGTTATTGTTCTAACAGGAGTGTTAAGCTTCTTCTCTATAACTATATCCCAAATGGTAATCTACTACAGCTTTTACAAGTGAGCAGGAACTTAGACTGGGAAACTAGATACAAGATTGCAGTTGGATCAGCTCAGGGTTTAGCTTATCTTCATCATGATTGTGTCCCTGCAATTATTCACAGAGATGTTAAGTGCAATAACATACTTCTAGATTCCAAATTTGAGGCATATCTAGCAGATTTTGGTCTTGCAAAGCTAATGAGTTCACCAAATTATCATCATGCAATGTCCAGAGTTGCTGGTTCCTATGGTTATATTGCCCCAGAGTATGGCTACTCCATGAACATAACAGAGAAGAGTGATGTCTACAGTTATGGAGTGGTTTTGCTAGAGATATTAAGTGGTCGTAGTGCTGTTGAATCCCATGTTGGAGATGGACAACACATAGTTGAGTGGGTGAAGAGAAAGATGGGAAGCTTTGAACCAGCAGTATCAATACTAGACACAAAGCTCCAAGGTCTACCAGATCAAATGGTGCAAGAGATGCTTCAAGCACTAGGAATTGCTATGTTTTGTGTGAACTCTTCCCCAGCAGAACGCCCCACTATGAAGGAAGTGGTTGCACTACTAATGGAGGTGAAGAGCCAGCCTGAGGAGATGGCCAAGACCTCTCAACCTCTAATAAAGCAGTCCTCAAATCAAAGCTGA 2940 0.4153 MLQLLNLSSTNVSGSIPLSFGQLSHLQLLDLSSNSLTGSIPAELGRLSSLQFLFLNSNRFTGSIPQNLANLTSLEVLCLQDNLLNGSIPSQFGSLTSLQQFRIGGNPHLTGQIPSQLGLLTNLTTFGAAATGLSGVIPSSFGNLVNLQTLALYDTAISGSIPPELGLCSELRNLYIHMNNFTGSIPPQLSKLQKLTSLLLWGNALSGPIPAELSNCSSLVIFDVSSNDLSGEIPGDFGKLVVLEQLHLSDNSLTGKIPWQLSNCTSLATVQLDKNQLSGTIPWQVGNLKFLQSFFLWGNLVSGTIPSSFGNCTELYALDLSRNKLTGSIPEEIFSLKKLSKLLLLGNSLTGRLPPSVANCQSLVRLRVGENQLSGQIPKEIGQLQNLVFLDLYMNNFSGSLPVEIANITVLELLDVHNNYLTGEIPSMIGELENLEQLDLSRNSLTGAIPWSFGNLSYLNKLILNNNLLTGSIPKSIRNLQKLTLLDLSFNSLSGGIPSEIGYVTSLTISLDLSSNAFAGELPDSMSALTQLQSLDLSHNMLHGGIKVLGSLTSLTSLNISCNNFSGPIPVTPFFRTISSSSYLPNPHLCQSNDGNTCSSSLIRKNGLKSAKTIALIMIVLASVTIIVIASWILVTRNHRYKVEKTLGISASTSGAEDFSYPWTFIPFQKLNFSIDNILHCLKDENVIGKGCSGVVYKAEMPNGELIAVKKLWKTNKEDEMVDSFAAEIQILGYIRHRNIVRLLGYCSNRSVKLLLYNYIPNGNLLQLLQVSRNLDWETRYKIAVGSAQGLAYLHHDCVPAIIHRDVKCNNILLDSKFEAYLADFGLAKLMSSPNYHHAMSRVAGSYGYIAPEYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGQHIVEWVKRKMGSFEPAVSILDTKLQGLPDQMVQEMLQALGIAMFCVNSSPAERPTMKEVVALLMEVKSQPEEMAKTSQPLIKQSSNQS 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4454g00053 979 FunFam Leucine-rich repeat receptor protein kinase EMS1 426 510 - -
Gabi4454g00053 979 PRINTS Leucine-rich repeat signature 435 448 - -
Gabi4454g00053 979 PRINTS Leucine-rich repeat signature 529 542 - -
Gabi4454g00053 979 SUPERFAMILY Protein kinase-like (PK-like) 668 954 IPR011009 -
Gabi4454g00053 979 SMART LRR_sd22_2 23 44 - -
Gabi4454g00053 979 SMART LRR_sd22_2 480 506 - -
Gabi4454g00053 979 SMART LRR_sd22_2 432 461 - -
Gabi4454g00053 979 SMART LRR_sd22_2 71 97 - -
Gabi4454g00053 979 SMART LRR_sd22_2 529 554 - -
Gabi4454g00053 979 SMART LRR_sd22_2 47 70 - -
Gabi4454g00053 979 Pfam Leucine Rich Repeat 243 264 IPR001611 GO:0005515
Gabi4454g00053 979 Gene3D Ribonuclease Inhibitor 1 128 IPR032675 -
Gabi4454g00053 979 Gene3D Ribonuclease Inhibitor 129 282 IPR032675 -
Gabi4454g00053 979 ProSiteProfiles Protein kinase domain profile. 682 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4454g00053 979 FunFam Piriformospora indica-insensitive protein 2 332 425 - -
Gabi4454g00053 979 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 760 972 - -
Gabi4454g00053 979 SMART LRR_typ_2 312 336 IPR003591 -
Gabi4454g00053 979 SMART LRR_typ_2 432 455 IPR003591 -
Gabi4454g00053 979 SMART LRR_typ_2 529 556 IPR003591 -
Gabi4454g00053 979 SMART LRR_typ_2 71 95 IPR003591 -
Gabi4454g00053 979 SMART LRR_typ_2 144 168 IPR003591 -
Gabi4454g00053 979 SMART LRR_typ_2 192 216 IPR003591 -
Gabi4454g00053 979 SMART LRR_typ_2 480 504 IPR003591 -
Gabi4454g00053 979 SMART LRR_typ_2 23 47 IPR003591 -
Gabi4454g00053 979 SMART LRR_typ_2 240 264 IPR003591 -
Gabi4454g00053 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Gabi4454g00053 979 Gene3D Ribonuclease Inhibitor 283 377 IPR032675 -
Gabi4454g00053 979 Gene3D Ribonuclease Inhibitor 474 599 IPR032675 -
Gabi4454g00053 979 FunFam Putative LRR receptor-like serine/threonine-protein kinase 511 595 - -
Gabi4454g00053 979 FunFam Piriformospora indica-insensitive protein 2 1 89 - -
Gabi4454g00053 979 Pfam Leucine rich repeat 2 60 IPR001611 GO:0005515
Gabi4454g00053 979 Pfam Leucine rich repeat 291 349 IPR001611 GO:0005515
Gabi4454g00053 979 Pfam Leucine rich repeat 434 493 IPR001611 GO:0005515
Gabi4454g00053 979 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Gabi4454g00053 979 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 212 954 - -
Gabi4454g00053 979 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 107 330 - -
Gabi4454g00053 979 SUPERFAMILY L domain-like 2 301 - -
Gabi4454g00053 979 Gene3D Phosphorylase Kinase; domain 1 657 759 - -
Gabi4454g00053 979 SMART serkin_6 682 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4454g00053 979 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 663 759 - -
Gabi4454g00053 979 Gene3D Transferase(Phosphotransferase) domain 1 760 977 - -
Gabi4454g00053 979 Gene3D Ribonuclease Inhibitor 378 473 IPR032675 -
Gabi4454g00053 979 Pfam Protein kinase domain 684 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4454g00053 979 SUPERFAMILY RNI-like 275 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4454g00053 Gabi-Chr4454 569728 572781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4454g00053 2 973 Receptor kinase-like Gene Family AT5G56040 45.998 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi4454g00053 Pkinase 2.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4454g00053 - - gmx:100819611 1731.07