Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4454g00046 ATGGCAGAATCGGAGACAGGGACGCCGACGGCGGCGTCGATGCCGGCAACACCGGATACACCAGGAGGGCCACTATTCACGTCGCTGCGAGTTGACTCACTGGCACACGAGCGTGACTCGTTTACAATGGCTAGGTGCAAGTGTTTGCCGACAAAGGGCAATTCGTGCCTCACTGATTTCTCTGTTGGCGTTCCAATTCCCAATGTGTCCCTCACTCAAAAGATTGGAGCAGAGTTTGTGGGAACGTTCATATTGATATTTGCAGCAACTGCTGGACCTATAGTGAACAACAAGTACAATGGAGCAGAGACTCTAATGGGGAATGCAGCTTGTGCAGGATTAACAGTGATGTTCATAATACTCTCAATTGGTCACATATCTGGTGCACACCTTAACCCATCTCTCACCATTGCATTTGCAACTTTCCGGCATTTCCCTTGGGCACATGTGCCAGCATACATAGCAGCACAAGTCTCTGCTTCAATATGTGCGTGTTATGCTCTCAAAGGTGTTTATCATCCTTATCTCTCTGGTGGTGTCACTGTCCCATCTGTCAGCGTTTCCCAAGCTTTTGCAACTGAGTTTATAATCACTTTTATTCTCTTGTTTGTGGTCACTGCTGTTGCTACTGATACTCGTGCGGTTGGTGAATTGGCAGGTATTGCTGTTGGGGCTACAGTTTTGCTCAACATTCTCATATCAGGGCCAACAAGTGGTGGTTCGATGAATCCGGTTCGCACATTGGGTCCAGCCGTTGCAGCAGGAAATTACAAGCATATATGGTTATATTTGGTGGCACCAACGCTTGGAGCTCTGGCTGGTGCAGGTGTTTATACGCTGGTGAAGCTGCGTGACAACGAGGCTGAACCGCCACGACAGGTTAGGAGCTTCCGTCGCTAG 900 0.49 MAESETGTPTAASMPATPDTPGGPLFTSLRVDSLAHERDSFTMARCKCLPTKGNSCLTDFSVGVPIPNVSLTQKIGAEFVGTFILIFAATAGPIVNNKYNGAETLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFATFRHFPWAHVPAYIAAQVSASICACYALKGVYHPYLSGGVTVPSVSVSQAFATEFIITFILLFVVTAVATDTRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWLYLVAPTLGALAGAGVYTLVKLRDNEAEPPRQVRSFRR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4454g00046 299 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4454g00046 299 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4454g00046 299 PRINTS Major intrinsic protein family signature 112 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4454g00046 299 PRINTS Major intrinsic protein family signature 149 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4454g00046 299 PRINTS Major intrinsic protein family signature 193 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4454g00046 299 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4454g00046 299 CDD MIP 73 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4454g00046 299 MobiDBLite consensus disorder prediction 1 15 - -
Gabi4454g00046 299 FunFam Aquaporin NIP2-1 62 293 - -
Gabi4454g00046 299 ProSitePatterns MIP family signature. 130 138 IPR022357 -
Gabi4454g00046 299 Pfam Major intrinsic protein 69 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4454g00046 299 Gene3D Glycerol uptake facilitator protein. 67 294 IPR023271 -
Gabi4454g00046 299 PANTHER AQUAPORIN NIP2-1 55 287 IPR034294 -
Gabi4454g00046 299 SUPERFAMILY Aquaporin-like 70 291 IPR023271 -
Gabi4454g00046 299 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4454g00046 Gabi-Chr4454 495633 501622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4454g00046 25 299 Major Intrinsic Protein MIP AT4G10380 75.089 9.27e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4454g00046 K09874 - gmx:100804356 563.918