Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4454g00034 ATGGGCTGTGTTCAGGCTAAGCCATTGGAAGCTTCAGATTACAATGGCCTAGAGAGGTTGAAATTGGATAATGGGTATGTTAAAAGTGATGACTTTGTTGCTCATAGAAGATCCACTGGTCGAAGACATGAACCTGTGGAGTCTCACAGAGAACCCACAAAGCATAAAGTTGAGTCTCGTGTTGGCAATGGCGAAAGGCAAGGACTTGAATTGGTTGGGGGTCATAAGGAGGTGTTGGTTAGTAAGACGAGAGATGCTGATGTACATGAGAGTAAGAAGTTGCCAAAAAAGTGTTTTGAGGATGATATGGTTGATGGGTGGCCCAGATGGTTAGTTGATAATGTTCCTAGACAAGTTTTGGCTGACTTGGTTCCCAAGAGTGCTGAATCATACAAAATGATAGATAAGGTAGGGCAAGGAACCTACAGCAATGTTTACAAAGCTCTAGATCGAGACACGGGAGAAATTGTGGCCCTCAAGAAGGTCCGCTTCAATACATCAGAGCCTGAGAGTATTAAATTTATGGCAAGGGAAATTATGATACTACAGAATTTGGATCATCCCAATGTAATTAAACTGAAAGGATTAGCCACTTCAAGAATGCAGTACAGTATATATCTAGTTTTTGACTTCATGCAAACAGATTTGGCAAGAATTATTGCTCCTAAAGAAGAGAGACTTACTGAACCCCAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTGCAGCATTGCCATGATAGGGGAATTTTGCATCGAGATATAAAAGGGTCAAACCTTTTGATTGATAAAAATGGGATGCTTAAGATTGGAGATTTTGGGCTTGCCAATTATTATAGTCCAAATCATAACCAGCCTCTCACAAGCCGGGTTGTGACACTATGGTACAGAGCTCCTGAGTTGCTATTAGGTGCCACAGATTATGGAGTTGGCATTGATTTATGGAGTGCTGGATGTCTCCTGGCAGAAATGTTTACAGGAATTCCAATAATGCCTGGCAGAACAGAGGTTGAGCAACTTCATAGAATTTTCAGGCTATGTGGCACACCATCAGAGGAGTATTGGAGAAAATTCAGACTTTCTACAACTTCTAGACCTCCAAAGTCTTATAGACCCAGCCTTGTTGAAACTTTCAGGGATCTCCCTCCATCTTCTTTGGGTCTTTTATGTACTCTACTTGCTTTGGATCCTGCATTCCGTGGCAGTGCATCTAAAGCTCTTAAAAATCAATTTTTCTTTACAAGCCCGTTGGCATGTGAGCTTTCTGGTCTGCCTGTAATCTACAGCGAAGATGATAAGCTTCTTCAAGCCAACGAACAGATCAAGTACATGAACTCTAAAATCAGGCGTTCTCGTACATATCTGGAGCGCCGTAAGAATTTAGCATCTAAGAGGCCAATAGAACATACTGTATCTTCTAAAGAGGAATTGAGAAGGAATGCTGAGCCTGAAACTTATGTTCTAAATGAAGAACTGGAAAGCACAACAACAAGCAGTACCTCATCTAGTGTAAACCAAGCTGGGGCTAAAGACCACTCACCTTTCTTTTCCTCTCCACTTTTGTCTTCAGATCAAAAGTTGTCTCCCAAATTCCATCACCATGCTAATGTTGGTGAAAAAAACATCAAGAACCTTCCTCAATTACCCAAGTCAAAACCAAATGCAACCAAGAAATATGACAGCAGATACAGACCAGACCAGGTTTTCAGGTCTGCTTCCACCAGAGAATTTAGGAACTCAAAACGGGAGGAACATTTACTCTTTGAAATTGATGATTAG 1782 0.413 MGCVQAKPLEASDYNGLERLKLDNGYVKSDDFVAHRRSTGRRHEPVESHREPTKHKVESRVGNGERQGLELVGGHKEVLVSKTRDADVHESKKLPKKCFEDDMVDGWPRWLVDNVPRQVLADLVPKSAESYKMIDKVGQGTYSNVYKALDRDTGEIVALKKVRFNTSEPESIKFMAREIMILQNLDHPNVIKLKGLATSRMQYSIYLVFDFMQTDLARIIAPKEERLTEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLKIGDFGLANYYSPNHNQPLTSRVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFTGIPIMPGRTEVEQLHRIFRLCGTPSEEYWRKFRLSTTSRPPKSYRPSLVETFRDLPPSSLGLLCTLLALDPAFRGSASKALKNQFFFTSPLACELSGLPVIYSEDDKLLQANEQIKYMNSKIRRSRTYLERRKNLASKRPIEHTVSSKEELRRNAEPETYVLNEELESTTTSSTSSSVNQAGAKDHSPFFSSPLLSSDQKLSPKFHHHANVGEKNIKNLPQLPKSKPNATKKYDSRYRPDQVFRSASTREFRNSKREEHLLFEIDD 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4454g00034 593 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Gabi4454g00034 593 SMART serkin_6 131 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4454g00034 593 Gene3D Transferase(Phosphotransferase) domain 1 214 453 - -
Gabi4454g00034 593 FunFam probable serine/threonine-protein kinase At1g54610 118 213 - -
Gabi4454g00034 593 MobiDBLite consensus disorder prediction 462 487 - -
Gabi4454g00034 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Gabi4454g00034 593 PANTHER CELL DIVISION PROTEIN KINASE 129 418 - -
Gabi4454g00034 593 MobiDBLite consensus disorder prediction 556 583 - -
Gabi4454g00034 593 MobiDBLite consensus disorder prediction 462 583 - -
Gabi4454g00034 593 MobiDBLite consensus disorder prediction 490 526 - -
Gabi4454g00034 593 Pfam Protein kinase domain 131 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4454g00034 593 ProSiteProfiles Protein kinase domain profile. 131 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4454g00034 593 Gene3D Phosphorylase Kinase; domain 1 122 213 - -
Gabi4454g00034 593 FunFam Putative serine/threonine-protein kinase 214 451 - -
Gabi4454g00034 593 MobiDBLite consensus disorder prediction 33 62 - -
Gabi4454g00034 593 SUPERFAMILY Protein kinase-like (PK-like) 126 417 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4454g00034 Gabi-Chr4454 365298 369728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4454g00034 126 430 Core Cell Cycle Gene Families AT5G10270 46.440 9.05e-89 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi4454g00034 Pkinase 2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4454g00034 K08819 - gmx:100776854 897.501