Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4454g00030 ATGGGGAGGAGGATATTGAATGATGCGCTGAGGACTATGGTGAATGCAGAGAGGAGAGGGAAAGCTACGGTGGAGCTCAACCCAATCTCCACTGTCATCTCTTCCTTTCTCAACATCATGAAACACCGTGGCTATATCAAGGACTTTCAAGTCTATGATCCACATAGAGTGGGGAGGATAACAGTACAACTACAAGGTAGGATTAACGATTGCAAGGCCCTTACTTACCGACAAGACCTCAAGGCAAGGGATGTTGAAGCCTTCAGATTGCGCACTCTTCCAACACATCAGTGGGGTTATGTTGTGATTACTACTCCTGATGGTGTTTTGGATCATGAAGAGGCCATTAGAAAGAATGAAAATGAGGATCAGTGA 375 0.4533 MGRRILNDALRTMVNAERRGKATVELNPISTVISSFLNIMKHRGYIKDFQVYDPHRVGRITVQLQGRINDCKALTYRQDLKARDVEAFRLRTLPTHQWGYVVITTPDGVLDHEEAIRKNENEDQ 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4454g00030 124 FunFam 40S ribosomal protein S15a 1 68 - -
Gabi4454g00030 124 Gene3D - 2 68 - -
Gabi4454g00030 124 Pfam Ribosomal protein S8 6 119 IPR000630 GO:0003735|GO:0005840|GO:0006412
Gabi4454g00030 124 SUPERFAMILY Ribosomal protein S8 3 119 IPR035987 GO:0003735|GO:0005840|GO:0006412
Gabi4454g00030 124 Gene3D - 69 121 - -
Gabi4454g00030 124 ProSitePatterns Ribosomal protein S8 signature. 99 116 IPR000630 GO:0003735|GO:0005840|GO:0006412
Gabi4454g00030 124 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 119 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4454g00030 Gabi-Chr4454 348769 351816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4454g00030 1 119 Cytoplasmic Ribosomal Protein Gene Family AT4G29430 80.672 1.34e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4454g00030 K02957 - gmx:100792186 219.164