Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4454g00029 ATGGAGAATCCAGAGGGCAATAACATGGCAATGGCTTTCATTACAGCATCTCATGATGCAAAGCTCACTACAGAAGAAGACAAGCACATAGACATTGATCAAGAGAATCATGGAGATATGAACCTTGCTATCACCAAATGCAGTGGGGAGACAAAAGCCAATTTGGCTGGAGTAATTACTCGCTACGTGGAGACTCTAAATCAGTACAATTTGCGCAACTTGGGCTACCCAACTAATCAGAATTTCAACTATGATGCATTAGCACCGTTGCTTCATTTTCACCTCAACAATGCTGGTGACCCTTTTCTAGGGAGCAGTTTCTCTCTGAATTCAACAGCATTTGAAGTTTGCGTTCTTGATTGGTTTGCAAACCTTTGGGAGATAGAGAAGGATGAGTACTGGGGATACGTCACAACTGGTGGAACTGAAGGCAATCTTCACGGGATTTTAGTAGGGAGAGAACGATTTCTGGATGGTATTCTATATACCTCACAAGATTCACATTATTCAATTTTCAAAATAGCAAGAATGTACCGAATGCAGTGTGTGAAGGTTGGCACATTAGTTTCCGGTGAGATTGATTGTGCTGAATTAGAGGCTTCACTACTTGCTCACAAGGACAAGCCAGCCATCATCAATCTAAACATAGGGACAACTATGAAAGGAGGTGTTGATGACCTTGATCTAGTAATACAAACACTTGAGAAATGTGCTTTCACTCGTGATCGATTCTATATTCACTGCGATGGAGCTCTATTTGGAATGATGTTGCCTTTTATGGAACGGGCCCCGAGGATTAACTTCAAGAAACCCATTGGAAGTATATCTATTTCTGGCCATAAGTTCTTGGGGTGCCCAATTCCTTGTGGTGTTGTAATTACTCGTTTAGAGCACGTCAACGCCCTATCTAGTGATGTTGAAATCATTGCTTCAAGGGATGTAACAATCACAGGCAGTCGTAGCGGGCATGCTCCAATCTTCTTCTGGTATGCTCTTCAAGAAAGAGGTTTAATAGGACTCAAGAAAGATGTGCAAATGTGCATCATGAATGCACGCCACTTACTGGATCAACTACGTGATGCTGGCATTGGTGCAATGTTGAATGAGTTTAGTAATATAGTTGTGTTTGAAAGGCCTCTAGATGATGACTTTACGCGTAGCTGGAATTTGGCGTGCAATGGAAATATTGCACATGTGGTGGTGATGCAACATATTACCATTGAAACCCTGGACTCCTTTGTTATAGAATTTATTCAAAAACGATCCATTTGGTTTAGGGATGGACGGTTTCAGCCTCTGTGCATTGCAAACGATGTTGGTTCTGGAAATTGTGCTTGTTCAATTCACAAATCATTATCATGA 1362 0.4148 MENPEGNNMAMAFITASHDAKLTTEEDKHIDIDQENHGDMNLAITKCSGETKANLAGVITRYVETLNQYNLRNLGYPTNQNFNYDALAPLLHFHLNNAGDPFLGSSFSLNSTAFEVCVLDWFANLWEIEKDEYWGYVTTGGTEGNLHGILVGRERFLDGILYTSQDSHYSIFKIARMYRMQCVKVGTLVSGEIDCAELEASLLAHKDKPAIINLNIGTTMKGGVDDLDLVIQTLEKCAFTRDRFYIHCDGALFGMMLPFMERAPRINFKKPIGSISISGHKFLGCPIPCGVVITRLEHVNALSSDVEIIASRDVTITGSRSGHAPIFFWYALQERGLIGLKKDVQMCIMNARHLLDQLRDAGIGAMLNEFSNIVVFERPLDDDFTRSWNLACNGNIAHVVVMQHITIETLDSFVIEFIQKRSIWFRDGRFQPLCIANDVGSGNCACSIHKSLS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4454g00029 453 Gene3D - 95 333 IPR015421 GO:0003824
Gabi4454g00029 453 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 274 295 IPR021115 GO:0016831
Gabi4454g00029 453 PANTHER - 22 450 - -
Gabi4454g00029 453 SUPERFAMILY PLP-dependent transferases 73 414 IPR015424 -
Gabi4454g00029 453 Pfam Pyridoxal-dependent decarboxylase conserved domain 111 363 IPR002129 GO:0016830|GO:0019752|GO:0030170
Gabi4454g00029 453 Gene3D Aspartate Aminotransferase, domain 1 334 421 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4454g00029 Gabi-Chr4454 345693 348141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4454g00029 216 362 Calmodulin-binding Proteins AT3G17760 27.848 1.61e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4454g00029 K25193 - gmx:100781665 725.317