Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4454g00026 ATGGATCACGGTGTCCAAGCCGTCATCGCCGCCACCGGAAGCTTCTTCGTCGTAACCCTCGTCTTCGCAGCCATCATCCTCGTCTGCCAGTACCGCAAGTCCACCAAAGCCCGAAACCGCACCACCCAGCTCCGAACCCGACCCGTTCCCAACCCGGAAAGGTCCTTCTCCAACGCCGTCGTCGACGCCAGCTGGTCCTTCGACCCAAACCTGAAGATCTCGATGGAGGAGCTGGCCCGCGCCACCGACAACTTCTCCCCGCACCTCATCGTCGGCGACGGAAGCTTCGGCCTCGTTTACAAGGCTCGGCTCTCCACCGGCGCGGTGGTCGCCGTGAAGAAGCTCTCCCAGGACGCCTTCCAAGGCTTCCGCGAATTCACGGCGGAGATGGAAACCCTAAGCAAGCTCCGCCACATCAACATCGTGAAGATCCTGGGCTACTGGGCCTCCGGGCCCGAACGGTTACTCGTCTACGAGTTCATCGAAAAAGGGAACCTCGATCAATGGCTCCACGAACCTTCTTCCCCTGACCCTGACCACGTTTCCGTTTCCGTTTCCAACGACTTTCGATTACCCTTATCTTGGGTAACAAGAGTCAAGATCATTCACGGCGTGGCCCATGGGCTTTGCTACTTGCATGGGCTTGAGAAGCCCATAATTCACAGGGACATCAAGGCTAGCAATGTGTTGTTGGACTCTGAGTTTGAGGCCCATATTGCTGATTTTGGGCTTGCCCGGAGGATTGACACTTCGCGTTCTCATGTGTCAACGCAGTTCGCCGGTACCATGGGTTACATGCCACCGGAGTATAAGGCTGGGCTTAACGTGGCCAACCCGAAGGTAGATGTATATAGTTTTGGGGTGTTGATGATTGAAACGGCCTCGGGCAAACGGCCCAACTTGCCGTTGAAATTGGACGACGTTGACATTGGGCTGGTCCAATGGGCTCGGAAGATGGAGGAGCGGAATGCTCATATGGATATGGTTGATGCTAATATTTCAAGGGAAGGGTTGAGGGAAGAGAGTGTTAAGGAGTATCTACACATTGCTTGTAGGTGCACTAATGAGTTGCAGAAAGAAAGGCCTGAAATGCCTGAGGTTGTCAAATTGTTGGACTCAATGCCGGTTTGA 1131 0.5464 MDHGVQAVIAATGSFFVVTLVFAAIILVCQYRKSTKARNRTTQLRTRPVPNPERSFSNAVVDASWSFDPNLKISMEELARATDNFSPHLIVGDGSFGLVYKARLSTGAVVAVKKLSQDAFQGFREFTAEMETLSKLRHINIVKILGYWASGPERLLVYEFIEKGNLDQWLHEPSSPDPDHVSVSVSNDFRLPLSWVTRVKIIHGVAHGLCYLHGLEKPIIHRDIKASNVLLDSEFEAHIADFGLARRIDTSRSHVSTQFAGTMGYMPPEYKAGLNVANPKVDVYSFGVLMIETASGKRPNLPLKLDDVDIGLVQWARKMEERNAHMDMVDANISREGLREESVKEYLHIACRCTNELQKERPEMPEVVKLLDSMPV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4454g00026 376 SUPERFAMILY Protein kinase-like (PK-like) 65 371 IPR011009 -
Gabi4454g00026 376 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Gabi4454g00026 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gabi4454g00026 376 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Gabi4454g00026 376 SMART serkin_6 85 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4454g00026 376 FunFam Phytosulfokine receptor 2 45 160 - -
Gabi4454g00026 376 FunFam Phytosulfokine receptor 2 161 375 - -
Gabi4454g00026 376 Pfam Protein tyrosine and serine/threonine kinase 91 371 IPR001245 GO:0004672|GO:0006468
Gabi4454g00026 376 CDD STKc_IRAK 91 374 - -
Gabi4454g00026 376 ProSiteProfiles Protein kinase domain profile. 85 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4454g00026 376 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 373 - -
Gabi4454g00026 376 Gene3D Transferase(Phosphotransferase) domain 1 161 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4454g00026 Gabi-Chr4454 305121 306975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4454g00026 69 371 Receptor kinase-like Gene Family AT5G07280 45.066 1.88e-70 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gabi4454g00026 PK_Tyr_Ser-Thr 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4454g00026 - - mtr:11410577 556.984