Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4454g00025 ATGGATCCTCACACTGAAGAGTTGCCTCAATACATACATATAAATCAGAATGAATTTTTTATACGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAGATATAATGCCAATGACCGTGACAGTGCATGTGGGGAAAGGTGCCTGAATGTATTAACCAGCACTGAATGCACCCCTGGTTATTGTCCTTGTGGTATCTTTTGCAAAAATCAGAGATTTCAGAAGTGTGAATATGCGAAAACAAAGCTGTTCAAAACTGAAGGCCGTGGGTGGGGTCTTTTGGCTGATGAGAACATTAAGGCAGGTCAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAATTCAAGCTGTTAAGGATGCGTTTATCATTTGCCTTAATGCATCTGAATCCATTGATGCAACCAGAAAAGGAAGCCTTGCCAGATTTATAAACCATTCTTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCTTGGGAGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCACTCAAATGTTCCGGATTTCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGGTACTCTGTTGAGAAAATTCCTGTATATGACTCTGCTGAGGATGAACTGGTGTCAAAGGTTAATGGACAAACTGAACACTCCATGGATGTTATACTTAAAGCTGAGCAACTATCGAAGTCCACTTCTTTTAATGTTCAGCCACTTGGCTCAGTTGAGATAAAGGGTTTAGATGTCAAGAAGATTAAAACTGATGTAATAAGCGAGGATATGAAATTGTACTCTCAAGATACTGAACAGTCCTTTTCACAAAAGAATGCAATGATATCGCGAATCCGAAGTAATACTGCGGGCAGAAACTATCGCATTGGACCTATGTCCATGTCTACCAAAAGATCAAAAGCATATAATGGGGGAAGGTTTAAAAATATCATACAGAAGAAAATTGATGCAAAGTTTGCAGCTTCCCTCTTAGAGTCAAAGGAAGCACAAGGGGAGATTTTAAAATATGAGGAAAGAAAGAATGACGCTACATCTGCTCTTGATTCCTTATACAATGAAATACGGCCAGCTATTGAAGAACATGAGAGGGATAGCCAAGACAGTGTATCTACGACTGTAGCAGAGAAGTGGATACAAGCTTGCTGCCTAAAATTGAAGGCGGAGTTTGATCTTTACTCGTCAATTGTCAAAAATTTTACTTGCACCGCTCAAAGGGCACCTGGCCAACCAAAACCTACTGAAGTAGATAGCGAAAACGAAATTAAGCTTTTGACAGGTTGA 1446 0.3942 MDPHTEELPQYIHINQNEFFIRRHKKQKEEDIAICECRYNANDRDSACGERCLNVLTSTECTPGYCPCGIFCKNQRFQKCEYAKTKLFKTEGRGWGLLADENIKAGQFVIEYCGEVISWKEAKRRSQAYEIQAVKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDELVSKVNGQTEHSMDVILKAEQLSKSTSFNVQPLGSVEIKGLDVKKIKTDVISEDMKLYSQDTEQSFSQKNAMISRIRSNTAGRNYRIGPMSMSTKRSKAYNGGRFKNIIQKKIDAKFAASLLESKEAQGEILKYEERKNDATSALDSLYNEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNFTCTAQRAPGQPKPTEVDSENEIKLLTG 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4454g00025 481 Pfam SET domain 94 200 IPR001214 GO:0005515
Gabi4454g00025 481 Coils Coil 381 408 - -
Gabi4454g00025 481 MobiDBLite consensus disorder prediction 460 481 - -
Gabi4454g00025 481 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Gabi4454g00025 481 Gene3D SET domain 1 235 IPR046341 -
Gabi4454g00025 481 Pfam AWS domain 43 80 IPR006560 GO:0005634|GO:0042054
Gabi4454g00025 481 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
Gabi4454g00025 481 PANTHER SET DOMAIN PROTEINS 6 443 - -
Gabi4454g00025 481 FunFam Histone-lysine N-methyltransferase 1 235 - -
Gabi4454g00025 481 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Gabi4454g00025 481 SUPERFAMILY SET domain 9 220 IPR046341 -
Gabi4454g00025 481 SMART set_7 83 206 IPR001214 GO:0005515
Gabi4454g00025 481 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4454g00025 Gabi-Chr4454 289849 301734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4454g00025 65 222 C2H2 Transcription Factor Family AT2G23740 34.270 2.16e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi4454g00025 SET 7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4454g00025 - - gmx:100804657 848.58