Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4454g00005 ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGACGGAGTTTTGAGATAAGGCTTCCTGGTCATCACAGGGACAAGTCACGTAGTTCAGTCCACGAATTGCATGAACAGCCTCCGGTTACACAGAACAGCCGATGGGCAAGCCTTCCGCCGGAGCTTCTTCGTGATGTTATTAAGAGATTGGAAGCAAGTGAGAGCACGTGGCCTGGACGTAAGCATGTGGTTGCTTGTGCCGCCGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTAAGCAGTCCTGAATTCTGTGGGAAGATTACTTTCCCGGTTTCCCTGAAGCAGCCAGGCCATAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACGTACCACCTCTTCCTTTGCCTTAGTCCTGCATTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGTACCAGAAGAACGACTTGCACGGAGTATATTATATCAACGAATGCAGATAATATATCAAGATCTAGTAGCACATACATTGGAAAAATGAGATCAAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAGCCTCCATATAATAATGCTCAGCTGTCTCCACCAGGCCGCAGCCGTAGGTTTTATTCGAAAAAGGTTTCTCCAAAGGTCCCTAGCGGCAGCTACAATATTGCCCAGGTCACATATGAGTTGAATGTTCTTGGTACAAGGGGCCCAAGAAGGATGCACTGCACCATGTACTCAATCCCTTCATCATCCCTTGAGCCTGGTGGTACTGTCCCGGGCCAGCCAGAGCTCCTTCCCCGCCCCCTTGAGGATTCATTCAGGAGTATATCCTTCTCAAAATCAATTGACAATTCAACTGAGTTTAGCAGCTCTAGGTTCTCAGACATAGTAGGAGCTGGCAATGAGGAGGAGGAGGTGGGAAAGGAGAGACCACTAGTTCTTAAGAACAAATCTCCAAGATGGCATGAACAGCTGCAATGTTGGTGCCTCAACTTTAGGGGAAGGGTGACCGTTGCCTCTGTCAAGAATTTTCAGCTGATTGCTGCAACACAACCTACAGCTGGTGCTTCTACAGGAACCGGAACTGGAACAGGAACAGGAACAGGAGTTACAGGACCTACACAAGCTCAGCCAACACAATCTGATCATGACAAGATTATCCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTATCGATATCCCCTCTCTGCATTTCAGGCTTTTGCCATATGTTTGACTAGCTTTGACACAAAACTGGCATGTGAATAG 1326 0.4608 MSFRSIVRDVRDGFGSLSRRSFEIRLPGHHRDKSRSSVHELHEQPPVTQNSRWASLPPELLRDVIKRLEASESTWPGRKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVSLKQPGHRDGTIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISTNADNISRSSSTYIGKMRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCTMYSIPSSSLEPGGTVPGQPELLPRPLEDSFRSISFSKSIDNSTEFSSSRFSDIVGAGNEEEEVGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPTAGASTGTGTGTGTGTGVTGPTQAQPTQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4454g00005 441 PRINTS Tubby superfamily signature 419 441 IPR000007 -
Gabi4454g00005 441 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Gabi4454g00005 441 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Gabi4454g00005 441 PRINTS Tubby superfamily signature 398 417 IPR000007 -
Gabi4454g00005 441 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Gabi4454g00005 441 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Gabi4454g00005 441 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Gabi4454g00005 441 PANTHER TUBBY-RELATED 38 439 - -
Gabi4454g00005 441 FunFam Tubby-like F-box protein 48 101 - -
Gabi4454g00005 441 SUPERFAMILY Tubby C-terminal domain-like 102 441 IPR025659 -
Gabi4454g00005 441 ProSitePatterns Tub family signature 2. 426 441 IPR018066 -
Gabi4454g00005 441 Gene3D Tubby Protein; Chain A 112 435 IPR025659 -
Gabi4454g00005 441 MobiDBLite consensus disorder prediction 369 396 - -
Gabi4454g00005 441 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Gabi4454g00005 441 Gene3D - 47 101 - -
Gabi4454g00005 441 Pfam F-box domain 53 100 IPR001810 GO:0005515
Gabi4454g00005 441 MobiDBLite consensus disorder prediction 28 50 - -
Gabi4454g00005 441 CDD F-box_AtTLP-like 53 97 - -
Gabi4454g00005 441 FunFam Tubby-like F-box protein 110 441 - -
Gabi4454g00005 441 SUPERFAMILY F-box domain 42 96 IPR036047 GO:0005515
Gabi4454g00005 441 Pfam Tub family 114 436 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4454g00005 Gabi-Chr4454 94985 98941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4454g00005 1 441 TUB Transcription Factor Family AT1G76900 69.247 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gabi4454g00005 Tub 1.4e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4454g00005 K19600 - gmx:100817532 763.451