Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4454g00003 ATGCAGCTCGGAGACGTAACAGTGTTGGAGAACACCTCCGGGGAAGCCGTGGCGGCGGCGACGACAGCCCTTGAGGGTTCTAACGGTGGCGAGGTGATTGCTTTGGATGCAAATTCTGGTGAAGAGAAAGGAAGGGAAGGTGGTGGAGATGAAGGTGATAAGATCAGCTGCGGAGGAAACCGGTGGCCACGCCAAGAAACCTTGGCTCTCTTGAAGATAAGGTCGGATATGGAAGCTGTGTTTCGAGATTCAAGTCTCAAGGGTCCACTCTGGGAAGAAGTTTCAAGGAAACTAGCAGAGTTGGGTTATCACAGAAGCGCAAAGAAGTGCAAGGAGAAATTTGAGAATGTGTACAAGTACCACAAAAGAACCAAAGAGAGCAGGAGTGGAAAATCAGAAGGAAGAACCTATAGGTTTTTTGATCAATTACAAGCCCTTGAGAACCGATTCACAGTGTCTTACCCGTCAAAACCACAACCTACTTTGGCAACAAACACTGTGGCATTGCCAACAACAATCTCTTATGTCACCACTGTTCCATCCACAAACCCTACAGTCATTTCTCCTTCACCACCACCACCAGCAGCACCACCAACCAATCCTACCACCCCAACTTCCACAACAACAGTAACAACCAACCCTAGAAACCCATCATCACAAGGCAATAACAACAACAATGTACCATATTCTTTGCCCAACATGAACCTTTTCTCAACCACCTCCACCTCTTCTTCCACTGCTTCCGATGAAGACTTGGAAGAGAAGTACAGGAAGAAGAGAAAATGGAAGGACTACTTCAGGAGGCTCACAAGACAAGTCTTGGCCAAACAAGAGGAAATGCAGAAGAGGTTCTTGGAAGCCATAGACAAACGAGAGAGAGAACAAGTTGCACAACAAGACGCTTGGAGGATTCAAGAAATGGCAAGAATCAACAGAGAACATGAGCTCCTTGTTCAAGAACGATCAACAGCAGCAGCAAAAAATGCAGCAGTTATTGCTTTTTTGCAGAAGTTGTCATCAGGTCAGCAAAATCCCACAACACAAGCTGTAGCAACAAGTGGCAGTTTCCTCCAACAACCACCGCCACAACAACCACAGTTATCACAACAACTACAACCACAACAGCAAGTTCAGCAGCATCCTCCACTTAACAACCAAATTGAAATCCATAAAATGAACAATGGTCACAATTCTTCTCCATTGAGCTCTTCTAGGTGGCCAAAAACAGAAGTTCATGCTCTGATAAGGTTGAGAACAAGTCTTGAACCCAATTATCAGGAAAATGGACCAAAAGCTCCTCTTTGGGAAGATATATCAACTGGGATGCAGAGGCTCGGGTACAATAGGAGTGCAAAGAGATGCAAAGAGAAATGGGAGAACATTAACAAGTATTTCAAGAAAGTCAAGGAATGTAACAAGCAAAGGCGTGAGGATAGTAAGACATGTCCTTATTTTCATGAGCTTGAAGCTTTATATAAAGAAAAGAGCAAAAACCAGAACCCTTTTGGTGCTTCATTCCATAATATGAAGCCAAATGAGATGATGGAGCCATTGATGGTGCAACCGGAGCAACAATGGAGACCTCCTCCTCAATATGAACAATCGGAAGATGGTTTGATGAAGGAGAATAATAATGGAGGTGAGTATGAAACAAAAGAAAGAGAGGAGCAAGACACAGAAGAAGAAGAAGATGATGATGATGATGAAGAGGGAGATGATAACATGGAAGAAGATGAAGGAGGTAACCGTTATGAGATGGCGACAAACAAACTTTCTTCAGTGGACACGGTTGAATGA 1797 0.4407 MQLGDVTVLENTSGEAVAAATTALEGSNGGEVIALDANSGEEKGREGGGDEGDKISCGGNRWPRQETLALLKIRSDMEAVFRDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKESRSGKSEGRTYRFFDQLQALENRFTVSYPSKPQPTLATNTVALPTTISYVTTVPSTNPTVISPSPPPPAAPPTNPTTPTSTTTVTTNPRNPSSQGNNNNNVPYSLPNMNLFSTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKRFLEAIDKREREQVAQQDAWRIQEMARINREHELLVQERSTAAAKNAAVIAFLQKLSSGQQNPTTQAVATSGSFLQQPPPQQPQLSQQLQPQQQVQQHPPLNNQIEIHKMNNGHNSSPLSSSRWPKTEVHALIRLRTSLEPNYQENGPKAPLWEDISTGMQRLGYNRSAKRCKEKWENINKYFKKVKECNKQRREDSKTCPYFHELEALYKEKSKNQNPFGASFHNMKPNEMMEPLMVQPEQQWRPPPQYEQSEDGLMKENNNGGEYETKEREEQDTEEEEDDDDDEEGDDNMEEDEGGNRYEMATNKLSSVDTVE 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4454g00003 598 Gene3D - 62 123 - -
Gabi4454g00003 598 Gene3D - 406 467 - -
Gabi4454g00003 598 MobiDBLite consensus disorder prediction 523 598 - -
Gabi4454g00003 598 MobiDBLite consensus disorder prediction 554 579 - -
Gabi4454g00003 598 CDD GT1 60 125 - -
Gabi4454g00003 598 MobiDBLite consensus disorder prediction 31 60 - -
Gabi4454g00003 598 MobiDBLite consensus disorder prediction 527 541 - -
Gabi4454g00003 598 MobiDBLite consensus disorder prediction 185 201 - -
Gabi4454g00003 598 MobiDBLite consensus disorder prediction 38 52 - -
Gabi4454g00003 598 FunFam Trihelix transcription factor GT-2 62 123 - -
Gabi4454g00003 598 CDD GT1 404 469 - -
Gabi4454g00003 598 SMART sant 402 464 IPR001005 -
Gabi4454g00003 598 SMART sant 58 120 IPR001005 -
Gabi4454g00003 598 ProSiteProfiles Myb-like domain profile. 398 462 IPR001005 -
Gabi4454g00003 598 FunFam Trihelix transcription factor GT-2 406 467 - -
Gabi4454g00003 598 MobiDBLite consensus disorder prediction 182 256 - -
Gabi4454g00003 598 MobiDBLite consensus disorder prediction 341 379 - -
Gabi4454g00003 598 PANTHER FI21293P1 40 548 - -
Gabi4454g00003 598 ProSiteProfiles Myb-like domain profile. 60 118 IPR001005 -
Gabi4454g00003 598 MobiDBLite consensus disorder prediction 202 247 - -
Gabi4454g00003 598 Pfam Myb/SANT-like DNA-binding domain 404 491 IPR044822 -
Gabi4454g00003 598 Pfam Myb/SANT-like DNA-binding domain 60 146 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4454g00003 Gabi-Chr4454 63346 66440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4454g00003 52 556 Trihelix Transcription Factor Family AT1G76890 47.940 4.58e-145 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi4454g00003 Myb_DNA-bind_4 3.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4454g00003 - - gsj:114370603 719.924