Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4454g00002 ATGCTGGGGGACTCAGCTGTGTTAGGAGGAGGAGGAGGTGGTGGTGGTGGTGAGGGAGGTGGCTCCGGAGAAGCAGTGGCGGCGGTGGCATCAGCAGCAGCTGGAACCCACGACGGAGCGGCGGCGGCGGCGGCAGGTGGTGGTGGAGTTGGATCAAATTCAGGGGATGATGAAAGAGGTAGAATCGATGAAGGTGAACGTAGCTTCGGTGGCAATCGGTGGCCACGACAAGAGACTTTGGCGCTGTTAAGGATACGGTCGGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAGGGTCCTTTGTGGGAAGAAGTCTCCAGGAAACTGGCAGAGCTTGGGTACCACAGAAGTGCCAAGAAATGCAAAGAGAAATTCGAGAACGTCTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGTGGAAAACCAGATGGCAAAACTTATCGTTTTTTTGATCAATTAGAAGCCCTTGAGAACCACCCTTCAATTCAATCACCCAACTCATCAAAACCACCACAACCGGCACTACTACCTGCACCACCACCACCACCACCAGTATCATCACTAGTAGTAACAACAACAACAACAACAACAACTGCATCATCAGTGTCATTACCAACTACTACTACAACATCAACAACAACAGTGCCAATGCCACTCCCTCATGCCACTGTTCCATCAACAAGCACACTTCCTATACCATTACCTCAACCCATTCTCACTCCCCCATCAATAAACCTCACAATCCCTTCATTCCCACCAACAAACCCTACAAATTTCCCACCATCAACAACAATCCCAATCTCTTTCGCCAACATCCCAACCGATCTTCTCTCCAATTCTAGCTCTTCCTCAACCTCTTCGGATCAAACATTGGAAGGGAGGCGCAAAAGGAAACGCAAGTGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTTATCGATAAGCAAGAGGAGTTGCAAAGGAGATTCTTGGAAGCCATAGAGAAACGAGAACATGAACGAATGGTTAGAGAAGAAGCATGGAGAGTACAAGAGATGCAAAGGATCAATAGAGAGAGAGAGATTCTCGCACAAGAAAGATCCATAGCTGCTGCCAAAGACGCTGCAGTTATGTCATTCTTGCAAAAGATAGCTGAACAGCAAAATCTCGGTCAAGCATTCAGCAACATCAACATTTTACAACAACAACAACAACAACAACAACAACAACCGGTGGTGCCGCCGCCGCCGCCGCCGCCGCCACCACAACAAGCAGCACCAGCTCCGCCGCCGGTGCAACAACCAGCACCAGTTGCTCAGGCTGGGCCACCACCATCATCGTCGCAGGCTTTGATGCTGCCATTGGTCCCACAACAACAAGTGACGAATATGGAAATCGTTAAAGCTAATAATAACGGTGAGAATTTCATGGGAGCGAGTTCTTCGAGGTGGCCAAAAGTGGAGGTTCAAGCATTGATAAAGCTGAGAACGAACCTTGATTTTAAGTACCAAGAAAATGGACCAAAAGGACCTCTTTGGGAAGAGATCTCATCCTCAATGAGGAAGCTCGGTTACAACCGAAGTTCTAAAAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGAAGAGACCAGAAGATTCCAAGACATGCCCGTATTTTCACCAGCTGGATGCTTTGTATAGAGAGAAGAACAAGTTCGACAACACGGTGGTGAAGCCGGAAAGCATGGTGGCGCCGCTGATGGTGCGGCCGGAGCAGCAATGGCCACCTCAGCAGATTGATTCAAGAGCAGGAGCAGATCGAGATGTGACCATGGAAGACGTGGAGAATGATCCCATGGAGCGGCATCATCAGGAGGAGGAAGATGATGAAGATGAAGAAGAGAAGGATATTGGAGAAGATGATGATGATGATGAAGAGGATGATGGTAACTATGAGATAGTGGCAAGCAAGCCTGCAACATCAGCAGCAGCAGGAACAGCAGCAACAACTTCAGTGGGTGCATCAGCTGAGTAG 2031 0.4845 MLGDSAVLGGGGGGGGGEGGGSGEAVAAVASAAAGTHDGAAAAAAGGGGVGSNSGDDERGRIDEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRSGKPDGKTYRFFDQLEALENHPSIQSPNSSKPPQPALLPAPPPPPPVSSLVVTTTTTTTTASSVSLPTTTTTSTTTVPMPLPHATVPSTSTLPIPLPQPILTPPSINLTIPSFPPTNPTNFPPSTTIPISFANIPTDLLSNSSSSSTSSDQTLEGRRKRKRKWKDFFERLMKEVIDKQEELQRRFLEAIEKREHERMVREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQAFSNINILQQQQQQQQQQPVVPPPPPPPPPQQAAPAPPPVQQPAPVAQAGPPPSSSQALMLPLVPQQQVTNMEIVKANNNGENFMGASSSRWPKVEVQALIKLRTNLDFKYQENGPKGPLWEEISSSMRKLGYNRSSKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKFDNTVVKPESMVAPLMVRPEQQWPPQQIDSRAGADRDVTMEDVENDPMERHHQEEEDDEDEEEKDIGEDDDDDEEDDGNYEIVASKPATSAAAGTAATTSVGASAE 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4454g00002 676 MobiDBLite consensus disorder prediction 405 437 - -
Gabi4454g00002 676 SMART sant 475 537 IPR001005 -
Gabi4454g00002 676 SMART sant 70 132 IPR001005 -
Gabi4454g00002 676 CDD GT1 72 137 - -
Gabi4454g00002 676 MobiDBLite consensus disorder prediction 396 445 - -
Gabi4454g00002 676 Gene3D - 74 135 - -
Gabi4454g00002 676 Gene3D - 479 540 - -
Gabi4454g00002 676 MobiDBLite consensus disorder prediction 56 71 - -
Gabi4454g00002 676 MobiDBLite consensus disorder prediction 661 676 - -
Gabi4454g00002 676 MobiDBLite consensus disorder prediction 623 649 - -
Gabi4454g00002 676 FunFam Trihelix transcription factor GT-2 479 540 - -
Gabi4454g00002 676 MobiDBLite consensus disorder prediction 37 74 - -
Gabi4454g00002 676 MobiDBLite consensus disorder prediction 168 189 - -
Gabi4454g00002 676 MobiDBLite consensus disorder prediction 190 222 - -
Gabi4454g00002 676 MobiDBLite consensus disorder prediction 278 298 - -
Gabi4454g00002 676 MobiDBLite consensus disorder prediction 604 622 - -
Gabi4454g00002 676 MobiDBLite consensus disorder prediction 162 222 - -
Gabi4454g00002 676 MobiDBLite consensus disorder prediction 1 23 - -
Gabi4454g00002 676 Pfam Myb/SANT-like DNA-binding domain 477 564 IPR044822 -
Gabi4454g00002 676 Pfam Myb/SANT-like DNA-binding domain 72 158 IPR044822 -
Gabi4454g00002 676 ProSiteProfiles Myb-like domain profile. 72 130 IPR001005 -
Gabi4454g00002 676 ProSiteProfiles Myb-like domain profile. 477 535 IPR001005 -
Gabi4454g00002 676 MobiDBLite consensus disorder prediction 587 676 - -
Gabi4454g00002 676 FunFam Trihelix transcription factor GT-2 74 135 - -
Gabi4454g00002 676 Coils Coil 304 331 - -
Gabi4454g00002 676 CDD GT1 477 542 - -
Gabi4454g00002 676 PANTHER FI21293P1 41 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4454g00002 Gabi-Chr4454 34805 38421 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4454g00002 70 592 Trihelix Transcription Factor Family AT1G76890 47.407 2.46e-146 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi4454g00002 Myb_DNA-bind_4 3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4454g00002 - - pvu:PHAVU_007G079700g 691.804