Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4452g00009 ATGTCTTCCAAACCCTTCAGGCCTTGCTCTTTGGACGTACTTATATATGTCCTTGCACCACATTATTATAATGCAGAAGAACTGGGTATGATTGAGAGTTTCCAAGAACAGCAACACCAACTACTGCATCTCCAACATGAAGAAGAGGCCAGTACGTCAAAGTCAAAGCCAAAGCCAAAGCCAGAGAAAGAAATAACGGTGACCCCAAAAAGGCAGCGCAAAATGCATGACGAGGAGGAAAGGCCCACTCCCTCATGGGCCTCGTCAGTGAATAAAAAACCAAGAAACACAAAGAATGCAGCACCACCATCTTCATCTTCATCTTCATCTTCATCTTCATCTTCATCGCCGCAGTCACCACTGCCACCGTCACCACCGTCGTCACCATCGCCACCGCCACCAGTACCAGCACCACCATCTTCATCTTCATCTTCATCTTCATCGCCGCTGCCACCACCGGTTCTGCCTGATGAATTCAAGAACCGTATGAGAGAGTTAAACGGCAGCGACGTGCAATTTGTGATGAGGAAGAATCTCTCCAAGACAGATCTGAGCGCGAATCACAACCGTCTATCAATGCCGATGAAAGAAATACGTTGCGATTTCCTGACTGAGGCTGAGAAGGCAACATTGCAAGAGAGAGAAAGCTGTAAAGGAAGACTTCGGGGTGTTGAAGTGAAGGTGTTGGATCCATCTCTCAGGGAATATGCTTTGATACTGAAGAGGTGGGAGATGACGAGCACGAGCATCTACTGTCTCATCAAAGACTGGAAAAGCGTTCTCTCTCATAACAGTTTGCAAGAAGGAGACCAACTTCAAATATGGTCTTTCAGAGTGGATGGCAAATTACATTTTGTATTAAATAAACTCTGA 873 0.4605 MSSKPFRPCSLDVLIYVLAPHYYNAEELGMIESFQEQQHQLLHLQHEEEASTSKSKPKPKPEKEITVTPKRQRKMHDEEERPTPSWASSVNKKPRNTKNAAPPSSSSSSSSSSSSSPQSPLPPSPPSSPSPPPPVPAPPSSSSSSSSSPLPPPVLPDEFKNRMRELNGSDVQFVMRKNLSKTDLSANHNRLSMPMKEIRCDFLTEAEKATLQERESCKGRLRGVEVKVLDPSLREYALILKRWEMTSTSIYCLIKDWKSVLSHNSLQEGDQLQIWSFRVDGKLHFVLNKL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4452g00009 290 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 48 290 IPR005508 GO:0003677
Gabi4452g00009 290 CDD B3_DNA 177 289 IPR003340 GO:0003677
Gabi4452g00009 290 MobiDBLite consensus disorder prediction 84 117 - -
Gabi4452g00009 290 SUPERFAMILY DNA-binding pseudobarrel domain 175 287 IPR015300 -
Gabi4452g00009 290 MobiDBLite consensus disorder prediction 45 159 - -
Gabi4452g00009 290 MobiDBLite consensus disorder prediction 118 156 - -
Gabi4452g00009 290 Gene3D - 154 290 IPR015300 -
Gabi4452g00009 290 MobiDBLite consensus disorder prediction 45 83 - -
Gabi4452g00009 290 Pfam B3 domain-containing protein At2g31720-like 160 262 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4452g00009 Gabi-Chr4452 84115 84987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4452g00009 163 289 B3 DNA Binding Superfamily AT1G05930 31.783 1.68e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4452g00009 - - gmx:102663833 160.614