Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4452g00006 ATGGCTGATAGGAAATTGGTTCCAATAACGGCGAGTTCTTCTTCTGTTGCGGTGTCTCCTCCTCTAAAATATGATGTGTTCCTCAGCTTCCGAGGGGAAGACACACGCGAAGGTTTCACTAATTATCTTTATGATGCATTGTGCCGTAAAAACATTGAGACTTTTATTGATAACAGCCTTGTTAGAGGAGATGAGATTTCATCATCCCTTCACCAAGCAATTGAAGAATCAAACATTTATGTCATCATTTTCTCCCAACACTATGCTTCTTCCACGTGGTGTTTGGATGAACTCACAAAGATACTCGAATGCAAGGAGCGATATGGAAGGCTTGTGATACCTGTTTTCTATAACGTTGACCCATCAGATGTTAGGAAACAAAGAGGCAGTTATGCAGATGCGTTTGTTTTGCATGACCAACGACCCAACCACCAAGTATCGCAGAGGTGGAAGGCTGCTCTCACCGAAGCAGCTGGACTATTGGGCTGGGATTCAAAAAAATATAGCCCTGAATACAAGCTCATTGAAGAAATTGCAAAAGACATTTTGGGAAAATTGAAACGTTCTTCCATGATTGACCACCAAGGACTGATTGGAATTCACAAGCACATTGCACAGATCCAGTCCATTTTGGATGTTGAGTCAACAGCTGTTCGGATCATCGGAATTTGGGGCATGGGAGGAATAGGAAAGACAACAATTGCTGGTGCAATATATCATAAACTAGCAACCCAATTCAGTTGCAGATGCTTTGTTGAAAATGTTCAGGAAAAAATAGAAAGAAATGGAATACACCATGTGCAAAGAAAATACTTATCAGAGCTTTTAGAAGAAAAAATTCCCAATTTGATTTTCGGATTTTTAAAGGAAAGGCTTAAACGGCGTAAGGTTCTCCTTATTCTTGATAATGTGAACAATTCGGGTCAACTTAATGATTTACTTGGAGGGCATGGTAGCTTCGGCCAGGGCAGTAGAATCATTCTCACTAGTAGAGACATGCAAGTGCTTAAGAATGCCAAAGCTGAAGAAATATATGAGGTTAAAGAGATGGGTTTTCAAGACTCTCTACAACTCTTCAGTTTAAATGCCTTTAAACAAAACTATCCAACTGAACATTATATGTGGTTGTCAGAAAAGGTACTGAATTATGCTAAAGGGATTCCATTAGCTCTCAAAGTTATGGGCTTATTGCTTTATGGTAGAACAAAGGAAGAACGGGAAAGTACAGTGGGAAAGCTGGAAAAGCTTCCCGATCCTGAAACTTTTAATGTGTTGAAATTAAGTTATGATGGGCTTGATGATGAACAGAAGGATATATTTCTTGACATAGCTTGCTTCTATAGAGGACATGACATGAATATTGTGAAACAAACACTAGATAGCTGTGGTTTCTCTGCTGCCATTGGAATGAGAGTTCTCATTGATCGAGGCCTTATATCTATTTTGAAAGATAAAATTGTTATGCATGATTTGATACAGGAAATGGGACAAGAAATTGTTCGTCAACAATGTGTCAAAGATCCTGGAAAACGCAGTCGATTATGGAAGCACGAGGATATTTATCATGTTTTAAGAAAGAACAAGGGGACGGATGCAGTCCAATGTATATTCCTTGACATGTGCCAAATCAAAGAAGTTCAACTACATGCTCAAGCCTTCAAAATGATGGATAATTTGAGACTGCTTCAGTTCTTTAAGTCTAACAAAAGACAAGACTCAAAAGTGCACATTCCATCATTTCTTGAGAGTTTTCCAGATGATTTAAGATTTCTTCGTTGGGATGGCTTCCCTCAACGATCTTTGCCGCTGAGTTTTTTCGCAGAAAATCTTGTTAGACTGGACATGCGTGATAGCCATCTTCAAATACTTTGGGAGAGAGATCAGACCTCTCTCAGTTCCCAAATATTGAAGAATTTCCTCAACAAGCTCAATTGTTTGTGGCTTAATGGTTGTGTTGAGCTTAGGCGTTTAAATCTTACTAGCAGTGTTCTTTCAAAATCTTCTGGATTAATAGTTCTCTATGGTTGTTGCAAACTTGAGATGTTTTCGGTCAGTAATGCAACCACGGGGGTTCTATTAGGAAACAATTTGCGTAGTAAAAAGCAAAGCTACCACCACAACTTTCAAAGTCCAAGGTCCGTACTTGAGGAATTCTCAGATACTTTTGACCCCTTAGATTGTCCTGAGTTAAATGAAGAACCGAGGGATAATATTCACTTACTAGAGTTAAAAATGTTGAGAGAACGTTCGGCCTCATTATTTCCAAGTCTCAACGAGCTTTGCTGGTTAGATCTCTCATACTGTGAATCCCTTTCAAGAACAGCAATACAAGAACTACCTTTGTCATTACACCATTTGGTCGGGCTTGAAGAGTTGAGCTTGCACAGGTGCCAAAGGCTGGAGTTTACTCCACCTTCAATTGGAAGTCTCAGCAAACTTTGCAAGTTAGACCTTAACTACTGTGAATCACTTGAAACTCTTCCCAGCAGCATTTTCAAATTGAAGTTGACAAAACTTGATTTGTATGGTTGCTCAATGCTGAGGAACTTCCCAGAAATCTTGGAGCCTGCAGAAAGTTTTGCGCACCTTCGCTTCACAAAAACAGCAATTAAAGAGATACCTTCATCATTGGAGTATTTGGTTGGGCTTCAAACCTTGAGCATGAACTTGTGCAGAGATCTTCAGTTTCTTCCAAACAGCATTGGTAATTTAACCCTTCTCTCCCAGCTTGATTTTTCAGGATGTGACAAATTATCCGAAATCCCAAGTGACATTGGCCGCTTGTCATTGTTAAGAGAGTTGTCACTGAGTGGAAGTGGTATAGTCAACCTTCCAGAGAGCATTGCTCATCTTTCAAGCTTGGAATCACTTGATTTAAGATGTTGCAAAGGGCTTGAATGTATCCCAGTGCTTCCTCCATTTCTGAAACACTTGTTGGCATTTGATTGCCCATCCGTTAGGAGCGTGTCAAGTTCAAGGTTTAATGTCTCTTCAGATTCCAAAGAGGAAGTCTTCAAATTTCATCTCACCAATAGTCAAGAACTGGATCCAGGTTCTCAAAGTAACATTGCGGATGATGCACGGCTTAGGATCCTCAAGGATACATATAGGTCTGTGTTCTATTTCTTTCCTGGGAGTTCAGTTCCTCATTGGTTCCGTTATCGTTGCAAGGGAGATTCAGTTACTTTGAATATGGATTCTCTAAATTGGTGCAATGATAATACGTCCATTGGTTTCGCCTTATGCTTTGTTTTGGGGCCTGATGAAGGTATGGATCATGGAGAAGGTGGATGTGGTGCTTATAGCTACAGATTCATTGTTGAATCTGATGATGGCATGCACGTTGTTCCTATACATGATCCGCTACCAAACTCCGGATCCCAGTTGAAGGGTGATCACATAACCCTGTGGAAATGTTGCTTCGATTCTTCAAGCATGAGCCAAATGCTCTCTCATGTCCACAACTTGACTTTTGAGATATGCAAGCGTGATGGTGCCTTTTGGCGAAAAATATTCAAGGTAAAAGAGTGTGGAATATCCCCTTTTTATAGTCAGAAAAAAAATGATAACGGTGGCGCTGGCGCTGGTGACTGTTCCAACTTCCAAAGATTCTCAAATAATGACGATGGGCCTCTAGAGCCTTTGCCAAGGGCTTACAAAAGAAGGCAGTGGTTCAGAGAAGGGCCAGCCCAACAAAAGAATGTTGAGATGGTTGATCCAGACCATCAAGGCAGTAGTGACTTCTGA 3747 0.4043 MADRKLVPITASSSSVAVSPPLKYDVFLSFRGEDTREGFTNYLYDALCRKNIETFIDNSLVRGDEISSSLHQAIEESNIYVIIFSQHYASSTWCLDELTKILECKERYGRLVIPVFYNVDPSDVRKQRGSYADAFVLHDQRPNHQVSQRWKAALTEAAGLLGWDSKKYSPEYKLIEEIAKDILGKLKRSSMIDHQGLIGIHKHIAQIQSILDVESTAVRIIGIWGMGGIGKTTIAGAIYHKLATQFSCRCFVENVQEKIERNGIHHVQRKYLSELLEEKIPNLIFGFLKERLKRRKVLLILDNVNNSGQLNDLLGGHGSFGQGSRIILTSRDMQVLKNAKAEEIYEVKEMGFQDSLQLFSLNAFKQNYPTEHYMWLSEKVLNYAKGIPLALKVMGLLLYGRTKEERESTVGKLEKLPDPETFNVLKLSYDGLDDEQKDIFLDIACFYRGHDMNIVKQTLDSCGFSAAIGMRVLIDRGLISILKDKIVMHDLIQEMGQEIVRQQCVKDPGKRSRLWKHEDIYHVLRKNKGTDAVQCIFLDMCQIKEVQLHAQAFKMMDNLRLLQFFKSNKRQDSKVHIPSFLESFPDDLRFLRWDGFPQRSLPLSFFAENLVRLDMRDSHLQILWERDQTSLSSQILKNFLNKLNCLWLNGCVELRRLNLTSSVLSKSSGLIVLYGCCKLEMFSVSNATTGVLLGNNLRSKKQSYHHNFQSPRSVLEEFSDTFDPLDCPELNEEPRDNIHLLELKMLRERSASLFPSLNELCWLDLSYCESLSRTAIQELPLSLHHLVGLEELSLHRCQRLEFTPPSIGSLSKLCKLDLNYCESLETLPSSIFKLKLTKLDLYGCSMLRNFPEILEPAESFAHLRFTKTAIKEIPSSLEYLVGLQTLSMNLCRDLQFLPNSIGNLTLLSQLDFSGCDKLSEIPSDIGRLSLLRELSLSGSGIVNLPESIAHLSSLESLDLRCCKGLECIPVLPPFLKHLLAFDCPSVRSVSSSRFNVSSDSKEEVFKFHLTNSQELDPGSQSNIADDARLRILKDTYRSVFYFFPGSSVPHWFRYRCKGDSVTLNMDSLNWCNDNTSIGFALCFVLGPDEGMDHGEGGCGAYSYRFIVESDDGMHVVPIHDPLPNSGSQLKGDHITLWKCCFDSSSMSQMLSHVHNLTFEICKRDGAFWRKIFKVKECGISPFYSQKKNDNGGAGAGDCSNFQRFSNNDDGPLEPLPRAYKRRQWFREGPAQQKNVEMVDPDHQGSSDF 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4452g00006 1248 Gene3D - 189 346 IPR027417 -
Gabi4452g00006 1248 Gene3D Ribonuclease Inhibitor 835 1003 IPR032675 -
Gabi4452g00006 1248 Gene3D - 350 433 IPR042197 -
Gabi4452g00006 1248 Gene3D Ribonuclease Inhibitor 527 834 IPR032675 -
Gabi4452g00006 1248 ProSiteProfiles TIR domain profile. 22 186 IPR000157 GO:0007165
Gabi4452g00006 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 443 IPR027417 -
Gabi4452g00006 1248 Pfam NB-ARC domain 202 407 IPR002182 GO:0043531
Gabi4452g00006 1248 SUPERFAMILY RNI-like 533 829 - -
Gabi4452g00006 1248 Pfam TIR domain 23 197 IPR000157 GO:0007165
Gabi4452g00006 1248 SUPERFAMILY RNI-like 750 998 - -
Gabi4452g00006 1248 Gene3D - 22 188 IPR035897 -
Gabi4452g00006 1248 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 895 IPR044974 GO:0006952
Gabi4452g00006 1248 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 188 - -
Gabi4452g00006 1248 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 163 IPR035897 -
Gabi4452g00006 1248 MobiDBLite consensus disorder prediction 1226 1248 - -
Gabi4452g00006 1248 PRINTS Disease resistance protein signature 949 965 - -
Gabi4452g00006 1248 PRINTS Disease resistance protein signature 384 398 - -
Gabi4452g00006 1248 PRINTS Disease resistance protein signature 220 235 - -
Gabi4452g00006 1248 PRINTS Disease resistance protein signature 291 305 - -
Gabi4452g00006 1248 SMART till_3 23 160 IPR000157 GO:0007165
Gabi4452g00006 1248 Pfam C-JID domain 1043 1186 IPR045344 -
Gabi4452g00006 1248 SUPERFAMILY "Winged helix" DNA-binding domain 422 524 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4452g00006 Gabi-Chr4452 46844 52414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4452g00006 809 998 WRKY Transcription Factor Family AT4G12020 27.895 6.78e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4452g00006 - - pvu:PHAVU_002G323300g 993.03