Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4452g00002 ATGGTGAAATCGAGCGAGAATGCTTCTGCTTCAGGTTCAGGTTCAGGTTCGGTGCCTCCTTTCTTGAACAAGTGTTATGAGATGGTGGAAGATAACTCCACCGATTCTATCATCTCTTGGAGCGAAGGTAGCTGCAGTTTTGTCATCTGGGACATAACCCAATTCTCCCTCACACTCCTTCCCACCTTTTTCAAGCACAACAATTTCTCCAGCTTCATCAGGCAACTCAATATCTATGGTTTCAGGAAAGTTGATACGGATCGCTGGGAATTTGCCAATGACAACTTTGTTAGGGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAACATCCTCACATTGCAGATCAACCAAAAGCCTTGCCGCAGCAAGGCAATTGTGATGAATCATCACAGGAAGCAACAAATTATGACCTTTCGAAAGAAGTTGAGAATCTAAAGTTGGATAAAAATTCCCTCATGCAGGAGTTGGTCAAACTTAGGCAGCACCAGGAATCTTCTGAGAATAATTTGCTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAGCAGATGTTATCATTCTTAGTCATGGTTGTGCAAAACCCTGGGTTCATGGTTCAGCTGATTCATCCTAAGGAAAATAATTGGCGTTTGTCTGAACAAGGGAATATGCTGGGCCAAGGTAAACAAGATGACAAACCAGTTGCTTCTGAAGGATTGATTATAAAGTATATACCACCTGCAAGTGAAACACCTAAGCCTGTAGTTCCGCTATCTCCTGCTTTCGATAAGCAAACAGAGCCTGAACTTTCTGTGGATGGGTTAAAAGACTTGTGCATCAGTTCTGAATTCTTGAAAGTGCTCCTGGATGAAAAATTGTGTCCTTTAGAAAATCATACCCCATTTATTCTACCAGATTTACCTGACGACAGTTCTTGGGAACAGCTTTTTCTAGGTAGTCCTTTCCTGGGAAACATTAAAGATTCTAATCGTGAAAATGAGGAGCCCACTATTAGTGGAATGGAGATGGAACCCACTATATCTGAAACTCAAAAGAAAAATCTCAAAACTTTTGAAGCAATGATTGTAGAAATGGAGAAAACTCAAGAGTGA 1107 0.4128 MVKSSENASASGSGSGSVPPFLNKCYEMVEDNSTDSIISWSEGSCSFVIWDITQFSLTLLPTFFKHNNFSSFIRQLNIYGFRKVDTDRWEFANDNFVRGQKHLLKNIRRRKHPHIADQPKALPQQGNCDESSQEATNYDLSKEVENLKLDKNSLMQELVKLRQHQESSENNLLLLSDRLQGMEKHQQQMLSFLVMVVQNPGFMVQLIHPKENNWRLSEQGNMLGQGKQDDKPVASEGLIIKYIPPASETPKPVVPLSPAFDKQTEPELSVDGLKDLCISSEFLKVLLDEKLCPLENHTPFILPDLPDDSSWEQLFLGSPFLGNIKDSNRENEEPTISGMEMEPTISETQKKNLKTFEAMIVEMEKTQE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4452g00002 368 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4452g00002 368 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4452g00002 368 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 225 IPR027725 -
Gabi4452g00002 368 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4452g00002 368 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4452g00002 368 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4452g00002 368 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Gabi4452g00002 368 Coils Coil 137 171 - -
Gabi4452g00002 368 Gene3D - 14 111 IPR036388 -
Gabi4452g00002 368 FunFam Heat shock transcription factor 1 14 111 - -
Gabi4452g00002 368 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4452g00002 Gabi-Chr4452 4638 8054 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4452g00002 1 319 HSF AT1G67970 49.533 5.26e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi4452g00002 HSF_DNA-bind 3.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4452g00002 K09419 - gmx:100813694 586.26