Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4451g00008 ATGCCAAATGATACTCTCTCCAAACACCTTTTTCATTGGGACAAGCAGCCATTACCATGGGAAATGCGTCTTAGAATTGCATACCATGTTGCACAGGCACTAGATCATTGTAGCGTGGAAAACAGGAAAATATATCATGATTTGAATGCATACAGGATTCTTTTTGATGAGGATGGTGATCCCCATTTGTCAAGTTTTGGGCTTATGAAAAATAGTCGAGATGGAAAAAGCTATAGTACTAACTTAGCTTATACTCCACCTGAGTTTTTGCGAACGGGCAGGGTTATCCCAGAGAGTGTGATCTACAGTTATGGAACCATTCTTCTGGATCTTTTGAGTGGCAAGCATATTCCTCCAAGCCATGCTCTGGATCTGATAAGAGGGAAAAATTCATTGTTCTTGATGGACTCATCCCTCGAAGGGCAATACGCAAGTGATGACGCTACAAAGTTGGTTGAGCTTGCTTCAAAATGTCTTCAGTTTGAGGCTAGAGAACGGCCTGATATTAAGTTTTTGCTTACTGCAGTTGCTCCTCTTCAGCATCAGAAAGAGGTATCATCTCATGTCTTGATGGGCCTTACAAAAACTACAGCAGTACTGCCAACTATGCTTTCTCCTCTTGGAAAGGCTTGTGCAAGGATGGATCTTACTGCTGTGCATGATATATTGTTAAAAACAGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGCTTTCATTCCAAGAGTGGACACAACAAGTGCAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTTAGAGACAAGGATTTCAAAAATGCAATTGAGTACTATTCAAAGTTGGTGGCTATGATGTCTGTTCCATCGGCTACTGTCTATGCAAGGAGAGCTTTCTCGTACTTGATCAATGATCAAGCAGAACTTGCTTTAAGGGATGCCATGCAGGCTCAAGTTTGCATACCTGATTGGCCAACTGCATTCTACTTGCAGGCTCTTGCTCTCTCGAAGCTGGGAATGGAAACTGATGCACAAGACATGCTTAATGATGGTGCAGCCTTTGAAGCAAAGAGGCCTATCAGCTGGCGTGGTTAA 1077 0.4188 MPNDTLSKHLFHWDKQPLPWEMRLRIAYHVAQALDHCSVENRKIYHDLNAYRILFDEDGDPHLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRVIPESVIYSYGTILLDLLSGKHIPPSHALDLIRGKNSLFLMDSSLEGQYASDDATKLVELASKCLQFEARERPDIKFLLTAVAPLQHQKEVSSHVLMGLTKTTAVLPTMLSPLGKACARMDLTAVHDILLKTGYKDEEGAENELSFQEWTQQVQDILNTKKFGDIAFRDKDFKNAIEYYSKLVAMMSVPSATVYARRAFSYLINDQAELALRDAMQAQVCIPDWPTAFYLQALALSKLGMETDAQDMLNDGAAFEAKRPISWRG 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4451g00008 358 Gene3D Tetratricopeptide repeat domain 248 355 IPR011990 GO:0005515
Gabi4451g00008 358 ProSiteProfiles Protein kinase domain profile. 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4451g00008 358 FunFam probable serine/threonine-protein kinase At4g35230 248 357 - -
Gabi4451g00008 358 FunFam probable serine/threonine-protein kinase At5g41260 2 193 - -
Gabi4451g00008 358 Pfam Protein kinase domain 15 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4451g00008 358 SUPERFAMILY Protein kinase-like (PK-like) 1 176 IPR011009 -
Gabi4451g00008 358 Gene3D Transferase(Phosphotransferase) domain 1 2 194 - -
Gabi4451g00008 358 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 352 IPR045845 GO:0004672|GO:0009742
Gabi4451g00008 358 SUPERFAMILY TPR-like 249 348 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4451g00008 Gabi-Chr4451 62383 68835 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4451g00008 1 210 Receptor kinase-like Gene Family AT3G58690 30.638 9.23e-23 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gabi4451g00008 Pkinase 3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4451g00008 K14500 - gmx:100793576 689.878