Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4449g00001 ATGGATGGTGACGGTGATGGTGAAGGAGGAACCACAAGGAAGAGAGGAAGAGAGGGCGAGACGACGAGGTACAGAGGAATCAGGATGAGGAAAGGGGGCAAGTGGGTCGCTGAGATTCGAGAACCCAGAAAGACTTCCCGGATTTGGCTCGGTTCTTATTCCACGCCCATTGCGGCGGCGCGTGCTTTTGACACCGCCAGCTTCTATTTCGGGAAACCATTGGATCGCCTTAACTTCCCGCAGCTTCTGGTCGGAGAAGGTGGCCCCGCCGGTTGCGACATGTCGGAAGCTTCTATTCGGAAGATAGCCAGGGACGTCGGTGCCGGAGAGGATGCTCTCCAGGCCATCCTCCACCGCCAGCATCCACACGTTTCCGCCGCCGCCGCAGCCGGGGAATTTGCGGAACGGGTTGACCTTAGTAAGATAACCGAACCCGAGATTTCGGATTGTGTCAAAGACAGGGATTAG 468 0.5705 MDGDGDGEGGTTRKRGREGETTRYRGIRMRKGGKWVAEIREPRKTSRIWLGSYSTPIAAARAFDTASFYFGKPLDRLNFPQLLVGEGGPAGCDMSEASIRKIARDVGAGEDALQAILHRQHPHVSAAAAAGEFAERVDLSKITEPEISDCVKDRD 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4449g00001 155 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Gabi4449g00001 155 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 149 - -
Gabi4449g00001 155 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Gabi4449g00001 155 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Gabi4449g00001 155 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Gabi4449g00001 155 Pfam AP2 domain 22 69 IPR001471 GO:0003700|GO:0006355
Gabi4449g00001 155 MobiDBLite consensus disorder prediction 1 25 - -
Gabi4449g00001 155 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Gabi4449g00001 155 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Gabi4449g00001 155 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4449g00001 Gabi-Chr4449 30514 31592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4449g00001 12 154 AP2-EREBP Transcription Factor Family AT2G23340 50.932 3.09e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi4449g00001 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4449g00001 K09286 - gmx:100783682 167.162