Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4440g00013 ATGTGCAGTTTGGAGGGAGAACCAGAGGTTTTGCTTGACCCCAATGCCTTCAGTGAAGATGGCACTGTCTCACTGAGCACGGCGTCGGTGAGCGAAGATGCCAAGTACTTGGCTTATGCGCTTAGTTCAAGCGGCAGTGATTGGGTAACTATAAAGGTACTGCGTATTGAGGACAAGAATGTTGAGCCTGATACTTTATCATGGGTCAAGTTTTCCTCCATTAGTTGGACACATGATAGCAAAGGTTTCTTTTATAGCCGATATCCAGCACCCAAAGATGGAGAAGTAGTAGATGCTGGGACTGAAACGAATGCTAACCTTCATCATGAGCTCTATTATCATTTTTTGGGTGCAGATCAATCAGAAGATATTTTATGCTGGAGAGATCATGAAAACCCTAAATATTTGTTTGGAGGAAGTGTTACTGATGATGGGAAGTATGTTCTTCTCTATATTGAAGAAGGGTGTGATCCAGTTAACAAATTTTACTACTGTGACTTGTCTGAACTTTCGGATGGACTGGAAAGTTTTCGGAATAAAAATGCCCTCCTCCCATTTGTCAAACTCATTGATGAATTTGATGCGAAGTATGAAGCCATTGCAAATGATGATACTGTGTTTACATTTTTAACTAATAAAGATGCTCCAAAATATAAACTAGTCCGAGTAGATCTGAAAGAACCAACTGCTTGGGCTGATGTTCTCCATGAGTCTGAAAAAGATGTACTTGAGTCAGCATGTGCTGTAAATGGTAACCAACTGATAGTGAGCTACTTGAGTGATGTGAAGTATCTTCTACAAGTAAGAGACTTAGAAACAGGTTCCTTGCTGCATCAATTACCAATTGACATTGGTACAGTTGATGGAATTTCGGCACGGCGTGAAGATAATGTGGTTTTCATTAGCTTTACAAGTTTTTTAACTCCTGGGACCATATACCAGTGCAACCTGGGAACAGAGATTCCTAATATGAAGATATTTCGTGAAATTGTTGTCCCTGGGTTTGACCGCTCTGGGTTTCATGTTAATCAGGTTTTTGTGCCTAGTAAAGATGGTACCAAGATCCCAATGTTCATTGTTTCCAGAAGGGATATTACTTTGGATGGTTCACACCCTTGTTTGTTATATGGATATGGTGGTTTTAACATAAGTCTTACCCCATCTTTCAGTGTCAGTCGCATTGTACTCACAAGACATTTAGGTGTTGTGTTCTGCATAGCGAATATTCGTGGTGGTGGAGAATATGGGGAGGAATGGCATAAAGCAGGCTCCCTTGCAAAAAAGCAGAATTGCTTTGATGACTTCATTTCTGCAGCTGAATACCTTGTATCTACTGGTTATACCCAACCCAGAAAGTTATGCATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGCGCTTGTATAAATCAGAGACCTGATCTTTTTGGCTGCGCACTGGCTCATGTTGGTGTTATGGACATGCTACAGTTCCACAAATTTACCATAGGTCATGCTTGGACATCAGATTATGGTTGTTCAGACAAGGAGGAAGAGTTTCATTGGCTAATCAAGTACTCACCATTACATAATGTCCGTCGACCGTGGGAACAGCATCCCGACCAGTCAATTCAGTACCCATCAACCATGTTGTTGACAGCTGATCATGATGACCGTGTTGTGCCACTGCACTCATTGAAGCTATTGGCGACAATGCAGTATGTCCTCTCTACGAGTTTGGAGAAAAGTCCCCAGACGAACCCTATAATTGGTCGCATTGACTGCAAGGCTGGACATGGAGCGGGTCGTCCAACACAAAAAATGATCGATGAAGCCGCTGACCGTTATGGTTTTATGGCCAAAATGTTAGAAGTGCATTGGATTGAATAA 1869 0.4189 MCSLEGEPEVLLDPNAFSEDGTVSLSTASVSEDAKYLAYALSSSGSDWVTIKVLRIEDKNVEPDTLSWVKFSSISWTHDSKGFFYSRYPAPKDGEVVDAGTETNANLHHELYYHFLGADQSEDILCWRDHENPKYLFGGSVTDDGKYVLLYIEEGCDPVNKFYYCDLSELSDGLESFRNKNALLPFVKLIDEFDAKYEAIANDDTVFTFLTNKDAPKYKLVRVDLKEPTAWADVLHESEKDVLESACAVNGNQLIVSYLSDVKYLLQVRDLETGSLLHQLPIDIGTVDGISARREDNVVFISFTSFLTPGTIYQCNLGTEIPNMKIFREIVVPGFDRSGFHVNQVFVPSKDGTKIPMFIVSRRDITLDGSHPCLLYGYGGFNISLTPSFSVSRIVLTRHLGVVFCIANIRGGGEYGEEWHKAGSLAKKQNCFDDFISAAEYLVSTGYTQPRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLQFHKFTIGHAWTSDYGCSDKEEEFHWLIKYSPLHNVRRPWEQHPDQSIQYPSTMLLTADHDDRVVPLHSLKLLATMQYVLSTSLEKSPQTNPIIGRIDCKAGHGAGRPTQKMIDEAADRYGFMAKMLEVHWIE 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4440g00013 622 ProSitePatterns Prolyl endopeptidase family serine active site. 434 464 IPR002471 GO:0004252|GO:0006508
Gabi4440g00013 622 FunFam Prolyl endopeptidase 1 331 - -
Gabi4440g00013 622 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 372 390 IPR002470 GO:0004252|GO:0006508
Gabi4440g00013 622 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 427 446 IPR002470 GO:0004252|GO:0006508
Gabi4440g00013 622 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 399 423 IPR002470 GO:0004252|GO:0006508
Gabi4440g00013 622 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 457 477 IPR002470 GO:0004252|GO:0006508
Gabi4440g00013 622 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 539 561 IPR002470 GO:0004252|GO:0006508
Gabi4440g00013 622 Gene3D alpha/beta hydrolase 332 612 IPR029058 -
Gabi4440g00013 622 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 5 320 IPR023302 GO:0004252
Gabi4440g00013 622 Gene3D - 4 331 - -
Gabi4440g00013 622 PANTHER PROLYL ENDOPEPTIDASE 3 620 - -
Gabi4440g00013 622 FunFam Prolyl endopeptidase 294 612 - -
Gabi4440g00013 622 SUPERFAMILY alpha/beta-Hydrolases 342 566 IPR029058 -
Gabi4440g00013 622 Pfam Prolyl oligopeptidase family 387 617 IPR001375 GO:0006508|GO:0008236
Gabi4440g00013 622 SUPERFAMILY Peptidase/esterase 'gauge' domain 5 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4440g00013 Gabi-Chr4440 67251 72804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4440g00013 364 504 Carbohydrate Esterase AT5G36210 28.671 3.84e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4440g00013 K01322 - gmx:100776544 1169.07