Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4439g00003 ATGGATGCTGATGCAATGGGAGGCGGAGGGTACACCCTGCTGAAGGATTTAAGATTTGAAATTGAAGGAAAAGAAGGAACTTTCTCTCTCTGCTTTTGGGTTTATTTGATGAACTCCACTACATTCCCTGCTATCATTATCCAGCAGGTTTACTCCGATATCTCCGAAAGTGCTCCTTTTCTTGTTATTAATGATGATAAGAGAATCAATATTTTACCAGTTCTTCTATTACATGAAGAAGCTCCTGATACTGGCAATATGAATTCCTGGACAGAAGTTCCACATGCAACTGTGGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTCTCCAAATCATATCCAGCTTCAGATTAATGGAGAGATTGCAGGAGAAAGGTCTCTGTCTTCCTTATTAAATAAGGAATCCAATTCTAGTAATTTGAAGAAAATAACTTTGGCCAATGTTGGTGGAGATGGAAATACTGTGCAAGGTTATGTGCACAATTTTGAAGTATTCCCTATTGTTTCTTGTATCAAGGATTGCCATTTAAAGGACCCTCCTCTGAAGTTATCTATTGATGAATCATCTGCCTCTGAGATTGAAGAAGAAAGCGATGGTGTTTGGAACATTGTTGGTGGCAAGGCATCATGTCGTAGGAACTTCTCTTTGGACGTTGTTCTATCAGATGCCTTTGGACAGCCTGTAGATAAGGAGAATGAGGTTTTTGCTTCACTTTTGTATGCTGACACGGGAGCACCAGTGGAGAATACAAGTGATGAAGAAGCACCCCTTTTGGCTAGCTATGATGGAATTGAGTTTTCTTCTTCTGAAAGACCAAGTAAACTTTTATTGGGGCGTGCATCATTTAAGCTCAAGATATCTCAGCTTTCATCCAAGTGTGATAACAGGTTGTTCTTCATCAGATTTTGTGTTCCACAATTAGGAAGTTATCCTTTTCTTGAGACATACTCCCGTCCAATTCGATGTATCTCCCGGAGCCGTAACACACGGTTGTCTACTTTGGTATGGAAAAAGTCAACTTCTGCTCTTCATCGACTTAGTTTATCACAATCTTCAGCAATGGATGATGTATCCTTGGAAAATCAGCATTCTAGTCCTGAAGCAAAAGCCAATCCACTTATGAAACGGTTTCGAATTGGGCATGACAAGATATCTATATCAGCAAAGGCTGATCCCAACTCAGAGCAACCTGATGAAGAATGCAATTCTCGTGCTTGGACTGCTAATCAGGTTGAGAATGGGTTTACAACAAGCTTGGACGGCAGACCTGCAAACATTGATGAAGCAGATGACTCTCCATCTGATTCAGAGAGTATAGGGGAGAGAAATTCACCTTCAAATAGTATGGCAAGCAGAAGATACCCAATATCTGATATGACTATTTTCAAATACTGCCTGGCAGGCTTGGCTGAGAAATCTCACATGCTTAAGGAAATTGCTACGTCTGCTTCTAAAAAAGAAATTTCGGAGTTGGCTCATAATGTGTCAATCTATTCAGGATGTTCACACCATGGAAATCAAATATTAATTACCAAGAGATTGATAGAAGATGGAACTAATCTTTGGAAGGTGATGTCTCCAAACAACTACCACATTCCTTGGGAGAGTGCGGTCTATGAGATTGAAGAGCAATTCATGAAGATTGCTTCATGTAGTTCAAGATCTCTCTCACATCAGGACCTAGAGCTTCTGAGAAGGATTGCTGGATGTCAAGAATATCTAACACAAGAGAACTTTGAGAAGTTGTGGTGCTGGTTGTACCCTGTAGCTTTTATAATATCAAGGGACCGGATAAATCCTATCTGGAATTCCACATCACCCAAGTGGATAGAAGGATTCATAACTAAGGAAGAGGCAGAAGCTTCACTACAAGGTACCACAGGATTTCAAGAACCTGGTACCTTTATACTCCGGTTCCCCACCTCAAGAAGCTGGCCCCATCCCGATGCAGGTAGCCTAATTGTGACTTATGTTGGCAGTGACTACAAACTTCACCACAGGCTACTTTCTATGGATCGTGTTTATGGTTCCGATGGCTCTGGTGATAAAAGAATTGACGTGAAACCACTGCAAGATATGCTACTGGCAGAACCTGAGCTGTCTCGATTGGGAAGGATAATAAGAAGTCATTAA 2151 0.4091 MDADAMGGGGYTLLKDLRFEIEGKEGTFSLCFWVYLMNSTTFPAIIIQQVYSDISESAPFLVINDDKRINILPVLLLHEEAPDTGNMNSWTEVPHATVDFEFPLEKWVHVGCEVSPNHIQLQINGEIAGERSLSSLLNKESNSSNLKKITLANVGGDGNTVQGYVHNFEVFPIVSCIKDCHLKDPPLKLSIDESSASEIEEESDGVWNIVGGKASCRRNFSLDVVLSDAFGQPVDKENEVFASLLYADTGAPVENTSDEEAPLLASYDGIEFSSSERPSKLLLGRASFKLKISQLSSKCDNRLFFIRFCVPQLGSYPFLETYSRPIRCISRSRNTRLSTLVWKKSTSALHRLSLSQSSAMDDVSLENQHSSPEAKANPLMKRFRIGHDKISISAKADPNSEQPDEECNSRAWTANQVENGFTTSLDGRPANIDEADDSPSDSESIGERNSPSNSMASRRYPISDMTIFKYCLAGLAEKSHMLKEIATSASKKEISELAHNVSIYSGCSHHGNQILITKRLIEDGTNLWKVMSPNNYHIPWESAVYEIEEQFMKIASCSSRSLSHQDLELLRRIAGCQEYLTQENFEKLWCWLYPVAFIISRDRINPIWNSTSPKWIEGFITKEEAEASLQGTTGFQEPGTFILRFPTSRSWPHPDAGSLIVTYVGSDYKLHHRLLSMDRVYGSDGSGDKRIDVKPLQDMLLAEPELSRLGRIIRSH 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4439g00003 716 ProSiteProfiles Src homology 2 (SH2) domain profile. 615 716 IPR000980 -
Gabi4439g00003 716 Gene3D SH2 domain 601 709 IPR036860 -
Gabi4439g00003 716 SUPERFAMILY SH2 domain 609 677 IPR036860 -
Gabi4439g00003 716 FunFam SH2 domain protein B 601 716 - -
Gabi4439g00003 716 MobiDBLite consensus disorder prediction 420 457 - -
Gabi4439g00003 716 CDD SH2_SHA 604 716 - -
Gabi4439g00003 716 Pfam Concanavalin A-like lectin/glucanases superfamily 9 172 - -
Gabi4439g00003 716 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 172 IPR013320 -
Gabi4439g00003 716 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 27 707 IPR001217 GO:0003700|GO:0006355|GO:0007165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Gabi4439g00003 Laminin_G_3 4.7e-08 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4439g00003 - - gmx:100803169 1205.28