Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4437g00003 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATCATTTGATCTATGGACAGCATCGTTGTGGTAAAGGCCGTAATGCCAGAGGAATCATTACCGCAGGACATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCATAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATCATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAAATCTACTTCAACCGATATGCCCTTAGGCACGGTCATACATAACATAGAAATTACATTCGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGCGCTGTAGCGAAACTGATTGCAAAAGAGGGAAAATCGGCCACGTTAAAATTACCTTTCGTCTTTGCAAAAAAATGGAGTAATTAA 567 0.4127 MAIHLYKTSTPSTRNGAVDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIITIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLKSTSTDMPLGTVIHNIEITFGKGGQLARAAGAVAKLIAKEGKSATLKLPFVFAKKWSN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4437g00003 188 SUPERFAMILY Translation proteins SH3-like domain 125 179 IPR008991 -
Gabi4437g00003 188 SMART Ribosomal_L2_2 40 116 IPR002171 GO:0003735|GO:0005840|GO:0006412
Gabi4437g00003 188 SUPERFAMILY Nucleic acid-binding proteins 2 123 IPR012340 -
Gabi4437g00003 188 MobiDBLite consensus disorder prediction 1 22 - -
Gabi4437g00003 188 Gene3D - 116 183 IPR014722 -
Gabi4437g00003 188 Gene3D - 1 112 IPR012340 -
Gabi4437g00003 188 SMART Ribosomal_L2_C_2 122 185 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gabi4437g00003 188 Pfam Ribosomal Proteins L2, RNA binding domain 40 116 IPR022666 GO:0003735|GO:0005840|GO:0006412
Gabi4437g00003 188 Pfam Ribosomal Proteins L2, C-terminal domain 123 179 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gabi4437g00003 188 FunFam 50S ribosomal protein L2, chloroplastic 1 112 - -
Gabi4437g00003 188 NCBIfam 50S ribosomal protein L2 3 179 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Gabi4437g00003 188 PANTHER RIBOSOMAL PROTEIN L2 36 181 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4437g00003 Gabi-Chr4437 25936 27828 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4437g00003 51 179 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 31.618 9.99e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4437g00003 K02886 - cit:4271193 346.665