Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4437g00001 ATGGAATTATCTTTAAGAGCTGCGAAACTAACAACTCTATTAGAAAGTAGAATTACCAACTTTTACACAAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGTGAAATGGTTGAATTTGCCAGCGGTGTGAAAGGAATAACGTTGAATCTTGAGAATGAGAATATCGGAATTGTTGTCTTTGGTAGTGATACCGCTATAAAAGAAGGAGATCTTGTCAAACGCACTGGATCTATTGTGGATGTTCCTGCGGGAAATGCTATGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCAAAGTGAAAGCCCCTGGGATTATAGAACGTAAATTTGTGCACGAGCCTATGCAAACAGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACAACTATTGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACATAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCTGAACCTCTGCAATTTCTGGCCCCATATTCTGAGTGTGCCATTGGGGAATATTTCTGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCAACAAATGTCATTATTGTTACGCCGACCACCAGGCCGAGAGGCTTTCCTAGGCGATGTTTTCTATTTACATTCCTGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCATTACCCGTCATTGAAACACAAGCGGGAGACGTATCGGCCTATATTCCAACCAATGTGATCTCCATTACTGATGGAAAAATATGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGGAGTTTAAAACTTGAATTGGCACAATATCGTGAAGTGGTCGCCTTTGCTCAATTTGGCTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTCTAGTCATTTATACAGCTGTCAATGGATTCTGTGATCGAATGCCATTAGACAAAATTGCTCAATATGAGAGTGTCATTCTAAGTACTATAAAACCAGAATTACTACAATCACTAAAAGGTGGACTAACTAGCGAAAGAAAGATAGAACCAGAGAAATTCTTAAAAGAAAAAGCTATTTCAATACTTTCCATAATTGAAATAAGTCCTAACCCCAATTCATCAGTTCCTGCCCCTGATGAGCCTGATTGTGTCAAAGTTCCAGTTATTGCAGTAGCAATCCCGGGTGCTTACGAGCCAGTGGAAATTGGACTTTCATTTCTTTCACAGGAACTAGTTCCATTCTTCCTTCTCTCAATCAAAGGAAGGGAATGCAACCTTGATCGATCGGAAGAAACCTCCATGGCAACAAGAAAGAAGGCCATAACCGATCCAAGTCAGCCAAGCATACCAGCCAGGGAGCCAAAAGAGAGTGAAAGCGAGCATAGGCAGGTCATTCTTTTAGATTTATGGTATAGCGTAGCTAGTGAGTGA 1866 0.4277 MELSLRAAKLTTLLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGITLNLENENIGIVVFGSDTAIKEGDLVKRTGSIVDVPAGNAMLGRVVDALGVPIDGRGALSDHERRRVKVKAPGIIERKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTTIAIDTILNQKQMNSRATSESETLYCVYVAIGHKRSTVAQLVQILSEANALEYSILVAATASDPEPLQFLAPYSECAIGEYFCDNGMHALIIYDDLSKQAVAYQQMSLLLRRPPGREAFLGDVFYLHSCLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGKICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVVAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYTAVNGFCDRMPLDKIAQYESVILSTIKPELLQSLKGGLTSERKIEPEKFLKEKAISILSIIEISPNPNSSVPAPDEPDCVKVPVIAVAIPGAYEPVEIGLSFLSQELVPFFLLSIKGRECNLDRSEETSMATRKKAITDPSQPSIPAREPKESESEHRQVILLDLWYSVASE 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4437g00001 621 Pfam ATP synthase alpha/beta chain, C terminal domain 382 483 IPR000793 GO:0015986
Gabi4437g00001 621 NCBIfam F0F1 ATP synthase subunit alpha 6 484 IPR005294 GO:0015986|GO:0045261|GO:0046933
Gabi4437g00001 621 Hamap ATP synthase subunit alpha [atpA]. 3 511 IPR005294 GO:0015986|GO:0045261|GO:0046933
Gabi4437g00001 621 FunFam ATP synthase subunit alpha 3 95 - -
Gabi4437g00001 621 Gene3D - 383 506 IPR038376 -
Gabi4437g00001 621 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4 503 IPR005294 GO:0015986|GO:0045261|GO:0046933
Gabi4437g00001 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 381 IPR027417 -
Gabi4437g00001 621 CDD ATP-synt_F1_alpha_C 386 501 IPR000793 GO:0015986
Gabi4437g00001 621 Gene3D - 96 382 IPR027417 -
Gabi4437g00001 621 CDD ATP-synt_F1_alpha_N 29 94 - -
Gabi4437g00001 621 ProSitePatterns ATP synthase alpha and beta subunits signature. 366 375 IPR020003 GO:0005524
Gabi4437g00001 621 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 151 375 IPR000194 GO:0005524
Gabi4437g00001 621 Gene3D - 4 95 IPR023366 -
Gabi4437g00001 621 MobiDBLite consensus disorder prediction 573 606 - -
Gabi4437g00001 621 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 12 96 IPR036121 GO:0046034|GO:1902600
Gabi4437g00001 621 CDD F1-ATPase_alpha_CD 96 378 IPR033732 GO:0032559
Gabi4437g00001 621 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 384 484 - -
Gabi4437g00001 621 FunFam ATP synthase subunit alpha, mitochondrial 96 382 - -
Gabi4437g00001 621 FunFam ATP synthase subunit alpha 383 508 - -
Gabi4437g00001 621 Pfam ATP synthase alpha/beta family, beta-barrel domain 27 94 IPR004100 GO:0046034|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4437g00001 Gabi-Chr4437 9253 19320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4437g00001 62 388 Primary Pumps ATPases(2) AT4G38510 25.298 1.44e-22 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4437g00001 K02132 - gmx:15308608 914.064