Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00100 ATGGCAGATGTTGAGGGAGATGTTGCAGCAGGAGTGCCGAAGAAGAGAACATTCAAGAAGTTCAGCTTCAGGGGCGTCGATTTGGACGCTCTTCTCGACATGTCCACTGATGAACTCGTCAAGCTCTTCAGTGCCCGTGCTCGCAGAAGGTTCCAGAGGGGTCTCACCCGAAAGCCCATGGCCTTGATTAAGAAGCTCCGCAAGAAAAGGGAAGCACCACAAGGTGAGAAGCCAGAGCCAGTCCGCACCCACCTCCGCAATATGATTATTGTACCAGAGATGATTGGGAGCATTATTGGAGTTTACAATGGCAAGACTTTCAATCAGGTTGAAATCAAACCTGAGATGATTGGCCATTACCTGGCTGAGTTCTCAATTTCATACAAGCCTGTCAAGCATGGAAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTCATTCCTCTCAAGTGA 453 0.4901 MADVEGDVAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00100 150 Hamap 30S ribosomal protein S19 [rpsS]. 47 139 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi4436g00100 150 ProSitePatterns Ribosomal protein S19 signature. 103 127 IPR020934 GO:0003723
Gabi4436g00100 150 NCBIfam 30S ribosomal protein S19 18 150 IPR005713 GO:0003735|GO:0006412|GO:0015935
Gabi4436g00100 150 PRINTS Ribosomal protein S19 family signature 83 102 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi4436g00100 150 PRINTS Ribosomal protein S19 family signature 115 130 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi4436g00100 150 PRINTS Ribosomal protein S19 family signature 103 115 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi4436g00100 150 Gene3D 30s Ribosomal Protein S19; Chain A 9 150 IPR023575 GO:0003735|GO:0005840|GO:0006412
Gabi4436g00100 150 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 8 150 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi4436g00100 150 Pfam Ribosomal protein S19 49 133 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi4436g00100 150 FunFam 40S ribosomal protein S15 8 150 - -
Gabi4436g00100 150 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 9 150 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gabi4436g00100 150 SUPERFAMILY Ribosomal protein S19 53 134 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00100 Gabi-Chr4436 861483 862888 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00100 1 150 Cytoplasmic Ribosomal Protein Gene Family AT1G04270 93.377 1.88e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00100 K02958 - qsa:O6P43_003270 283.493