Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00094 ATGGACGACGTGAAAGACAAGATGAAAGGGTTCATGAAGAAAGTCAACAACCCTTTCTCATCATCATCCTCTGGAAAATTCAAGGGCCAAGGTAGAGTCTTGGGATCTTCTTCATCTTCACCAAGCAATTCCATTCCTACCCTTCGCCCCAATCCTATTTCGAAACCCACTTCAGCTGCAACGAGTTCCACTCCCTTACCTCAGAAAACGACCGAGAGGGCTCACAAACCGAGAGATGATGGGTTTGACCCTTTTGATTCTTTGGTCACCTCAGCCAAGAGATCTCAAAATGGGTATTCACTGAATGTGTTTGAATGCCCCATTTGTAAACAACCTTTTAGATCCGAAGAAGAGGTGTCTGTACACGTGGATGGTTGTTTGAGTAACCAAGTTGAGCGTGATGATGGAAATGCTGTCTCAGAATTGCCAGAGAATGAAGTTGAGTCAAATAGTGAATTGGAGGTTTGTCTTGGTACTTACATTTCTGGTAAGCCATCTGAGGGATCAGTTGATGTTGTTTTCAAATTGTTGAGGAATATTGTTAGGGAACCGGAGAATGTCAAGTTTAGGAAGATCAGGATGAGTAACCCAAAGATAAAAGAGGCTGTTGGTGAGGTTATAGGGGGAGTTGAGTTGCTGAGCTTTCTTGGCTTTGAACTTAAGGAGGAGAATGAAGAGACATGGGCAGTGATGGAGGTTCCTACAGAGGAGCAAATTAAACTGATTAAGAAAGCAATTGTGTTGCTGGAAACACAACTTGTACAAGAACCTCCAAAGAGAGAGAATTTGGCGTCCACAACTTCTGCTGATATAGATTCAAAGGATAAACCAAAGCAGGTCGACAGACAGGTGAAGGTCTTCTTTGCTGTCCCTGAAAGCGTTGCAGCTAAAATTGAGCTACCAGATTCCTTCTATAAACTTTCAGTCGAAGAGGTGAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGAGGAGTCTCAGCTTTTAATCCCAAAGTCACTTAAAGAAAAGCAAGCTAAAGCTGCCAGGAAGAGATACACAAAAACTATCATTAGGATTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTTCTCCATGGGAACCAACTACTGCTCTCTATGAGTTTGTGAGCTCGGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTGGTTATCCAACGGCGGGTGATCCCTCATTTTGCAAAAGCAGGGGGAAATACTAAAACAATAGAGGAAGAAGACCTCGTACCTTGTGCTCTAATTAAGTTCAAGCCCCTGGAAACAGATTCTGTTGTTTTCACCGGTCTCAAAAATGAATTGCTTGAAATCTGCGAACCACTTGTCAATGGTTAA 1368 0.4232 MDDVKDKMKGFMKKVNNPFSSSSSGKFKGQGRVLGSSSSSPSNSIPTLRPNPISKPTSAATSSTPLPQKTTERAHKPRDDGFDPFDSLVTSAKRSQNGYSLNVFECPICKQPFRSEEEVSVHVDGCLSNQVERDDGNAVSELPENEVESNSELEVCLGTYISGKPSEGSVDVVFKLLRNIVREPENVKFRKIRMSNPKIKEAVGEVIGGVELLSFLGFELKEENEETWAVMEVPTEEQIKLIKKAIVLLETQLVQEPPKRENLASTTSADIDSKDKPKQVDRQVKVFFAVPESVAAKIELPDSFYKLSVEEVRREAELRRKKIEESQLLIPKSLKEKQAKAARKRYTKTIIRIQFPDGVVLQGVFSPWEPTTALYEFVSSALKEPGLEFELMHPVVIQRRVIPHFAKAGGNTKTIEEEDLVPCALIKFKPLETDSVVFTGLKNELLEICEPLVNG 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00094 455 SUPERFAMILY Ubiquitin-like 315 428 IPR029071 -
Gabi4436g00094 455 FunFam UBX domain-containing protein 6 338 429 - -
Gabi4436g00094 455 CDD PUB 157 250 - -
Gabi4436g00094 455 Gene3D - 338 430 - -
Gabi4436g00094 455 Gene3D - 162 251 - -
Gabi4436g00094 455 MobiDBLite consensus disorder prediction 1 88 - -
Gabi4436g00094 455 ProSiteProfiles UBX domain profile. 344 428 IPR001012 GO:0005515
Gabi4436g00094 455 SMART PGNneu 168 235 - -
Gabi4436g00094 455 Pfam UBX domain 345 394 IPR001012 GO:0005515
Gabi4436g00094 455 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 454 - -
Gabi4436g00094 455 SUPERFAMILY PUG domain-like 165 251 IPR036339 -
Gabi4436g00094 455 MobiDBLite consensus disorder prediction 15 70 - -
Gabi4436g00094 455 Pfam PUB domain 167 242 IPR018997 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00094 1 376 C2H2 Transcription Factor Family AT2G01650 56.818 2.85e-147 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4436g00094 UBX 4.5e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00094 K14011 - gmx:100779271 683.715