Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00092 ATGGAGAGAGATTTCATGGGTCTGAGCTCAAAAGAACCACTAGCTGTGGTCAAAGAGGAGATGAATGATGATGGGTGCAACGACTCAGGCTTCACGAAGGGTTCGGTTGCACAATGGCCCTTCTCGAACAAAGTCTCTGCTCTTCCAAATCTGATGTCTTTCAAGGTATCTCAAGATGATAAGACTAAAAATATGGTCTCTGATCCCATAACATCTACTGGGTTTTTGACTATTTTAAGTCAAGATGCATTTGACTCTAGTCAAAAACGCTCTGCTGGTGAACCACTGAAATCTTTCAATCATGATGGGCAAGGTGGCTTTCATTTTTCGCTGGCTCCGTATCCTGCACAGCATGATATGAAGTATGTGACTTGTCCTCATGATGATGTGAAGACGTTTTCAGTTTCCTCTGGAAAGCCATTCCTGAAGAATCATTTTGCAACTGCTGCTCAGAATATGAATGGTACTAATGTGAAGCAGCCGCTACTTGGGGGAATACCTGTTGCAACGCCTCATTCGGTTCTTTCAACCATTGGTGCTGTTGCTGGAATGACCGAATCATGTGTGAAACCATCTGCGCCTTTCCCCCAGCTTACCATCTTCTATGCTGGTGCTGTCAATGTCTTTGATGATATTTCTGCAGAGAAGGCACAAGCTATCATGTTGTTGGCTGGCAATGGCTTATCTGCAGCTTCTAACATGGCACAGCCAAAAGTTCCGGCACCTGGCTTGAAATTGGCAGCTGGTGATGGTGTGTCAGTGAGTCCCCCTGCAAATACACTACCCTGCTCTGCTGTTTCAAGTCCTCTGTCTATTTCATCACATACTGGTGCACAGTCAGGGAGTGGCTCAAGTAGCACTGATGAATTTTTGGCCGCCAAAACAACTGGAGTTCCTACCACTCCTGTTAGCAATGTCGAGCCTCCAAAAATAGTCAATGCAACCACTATGTTGACGTCAGCTGTGCCTCAGGCTCGTAAAGCATCCTTGGCTCGATTTTTAGAAAAGCGCAAGGAAAGGGTGATGAATGCAGCACCATATAACCTCAACAAGAAGTCTGAAGAGTGTACCACTGCAGAATACAATGGTGCTAACTTCTCTGCAAGTACTGCTACTAATACTATCTCAGTCAAGCAAGGATAG 1143 0.4523 MERDFMGLSSKEPLAVVKEEMNDDGCNDSGFTKGSVAQWPFSNKVSALPNLMSFKVSQDDKTKNMVSDPITSTGFLTILSQDAFDSSQKRSAGEPLKSFNHDGQGGFHFSLAPYPAQHDMKYVTCPHDDVKTFSVSSGKPFLKNHFATAAQNMNGTNVKQPLLGGIPVATPHSVLSTIGAVAGMTESCVKPSAPFPQLTIFYAGAVNVFDDISAEKAQAIMLLAGNGLSAASNMAQPKVPAPGLKLAAGDGVSVSPPANTLPCSAVSSPLSISSHTGAQSGSGSSSTDEFLAAKTTGVPTTPVSNVEPPKIVNATTMLTSAVPQARKASLARFLEKRKERVMNAAPYNLNKKSEECTTAEYNGANFSASTATNTISVKQG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00092 380 ProSiteProfiles Tify domain profile. 191 226 IPR010399 -
Gabi4436g00092 380 Pfam tify domain 197 225 IPR010399 -
Gabi4436g00092 380 Pfam Jas motif 323 347 IPR018467 -
Gabi4436g00092 380 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 137 357 IPR040390 -
Gabi4436g00092 380 SMART tify_2 191 226 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00092 Gabi-Chr4436 780128 783919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00092 39 353 Tify Gene Family AT3G17860 35.077 3.60e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gabi4436g00092 tify 1.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00092 K13464 - gmx:100807043 523.857