Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi4436g00071 | ATGAGATCCCAACGGCCTCTCCATCTCATACTATCCCTCGTCTTCTTGGCAGTCGCATTCTCAGCGGCCACCGTCGTAGAAAACGGCGGAACCACTAGCAGTGACGGCAACACTGATTTCATCCGGACGAGTTGCAACACCACGCTCTACCCGAAAGTCTGCTACAGTTCCCTCTCTCGGCACGCCAATGCTGTCCAACAGAACCCTGGCCAGCTAGCTCGTGTCGCCATAGCCGTTAGCCTCTTGAAGGTCCAAAGCGCGGCCTCCTACCTCTCCAACCTCACGCTCGAAGCCGACAACTCGCCCGCTGCCAAGGCGGTCCATGACTGCTTCTCGAAATTAGACGACGCCGTCGACCAAATCCGCGACTCACTGAAGCAGATGCGGCAGATAGGATCCTCTGGCGCCGGTGATGGCACCAGCTCGTTCCGATTCCAGATGAGCAACGTGCTGACGTGGATGAGCGCGGCGATCACCAACGAGGGGACGTGTATGGACGGATTAAACGACGTATCGGAGGGTCCGGTGAAGACGGATGTATCCCGTCGGGTGACGAAGACGAAGAAGATAACAAGCAATGCTTTGGCGCTTGCCAATAGATATAGCAACAAGGGAATGCCTTGA | 624 | 0.5641 | MRSQRPLHLILSLVFLAVAFSAATVVENGGTTSSDGNTDFIRTSCNTTLYPKVCYSSLSRHANAVQQNPGQLARVAIAVSLLKVQSAASYLSNLTLEADNSPAAKAVHDCFSKLDDAVDQIRDSLKQMRQIGSSGAGDGTSSFRFQMSNVLTWMSAAITNEGTCMDGLNDVSEGPVKTDVSRRVTKTKKITSNALALANRYSNKGMP | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi4436g00071 | 207 | SMART | PMEI_2 | 36 | 197 | IPR006501 | GO:0004857 | |
| Gabi4436g00071 | 207 | FunFam | Pectinesterase | 37 | 201 | - | - | |
| Gabi4436g00071 | 207 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 9 | 198 | - | - | |
| Gabi4436g00071 | 207 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 39 | 202 | IPR035513 | - | |
| Gabi4436g00071 | 207 | CDD | PMEI-like_3 | 43 | 203 | - | - | |
| Gabi4436g00071 | 207 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 36 | 201 | IPR035513 | - | |
| Gabi4436g00071 | 207 | Pfam | Plant invertase/pectin methylesterase inhibitor | 39 | 197 | IPR006501 | GO:0004857 | |
| Gabi4436g00071 | 207 | NCBIfam | pectinesterase inhibitor domain | 11 | 201 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi4436g00071 | Gabi-Chr4436 | 627412 | 628035 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi4436g00071 | 9 | 197 | Carbohydrate Esterase | AT5G53370 | 27.320 | 2.55e-14 | 69.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi4436g00071 | - | - | gmx:100812251 | 258.84 |