Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00066 ATGGACAAACTCTTATTCAACTGTTACATTGGATATTTTCTTCTTTGTTCTCTCTTGGTTGTGCATGGCAAAGAATTATCATGCAATCAAACCCCGTACCCGCAAGTGTGCAAGCATTACATTGACATTACCAACACATTATCAACCCTAGATGCTTCATCTTCTTCCTTCCATGATATGGCCCTTAAGGTCACCATGGTCCAAGCCATTGAAGCTCACAAACTTGTCTCAATCATGGAATTGAATAATTTCAAGGACAAGCGAGCAAAGTCAGCATGGGAAGATTGTTTGGAGCTCTATGAGGACACAATTCATCATCTCAACCACTCAATGAGGTCAAACAATCTAAATGACAAGCTAACTTGGCAAAGTACATCCATTGCAAACCATCAAACATGCCAAAATGGTTTCATTGAATTCAACCTTCCCTCTCACCTAAACTACTTCCCATCCATGTTAAGCAACTTCTCCAAATTGCTTAGCAATTCCTTGTCCATTAGCAAAGCTGTGGCTTTGTCATCATCATCATTGTCATCAACCAAACAAATTGGTGGGAGAAAGTTGCTTTCGGATGGCTTCCCCCATTGGTTGTCAGCTTCAGATAGAAGGCTTCTTCAGGCAACGGAGGGAACACCAAAAGCTGATATTGTGGTGGCACAGGATGGAACTGGGAACTATAAGACCATATCTGAGGGTGTGGCTGTAGCTGCTAAACTCAAAGGGAAAGGACGAGTTGTTTTGCATGTCAAAGCAGGAGTTTACCGAGAAAGTGTTGATATCAAGAAGATAGTGAAGAACTTAATGATCATTGGAGATGGGATTGATGCCACAATTGTTACTGGTAACCATAACGCACAAGATGGCTCCACTACTTTTCGTTCAGCTACTTTTGCTGTTTCTGGTGAGGGTTTCATCGCCAAGGACATAACTTTTGAGAACACAGCAGGACCACAGAAGCACCAAGCGGTGGCTCTCCGGTCCGGCGCCGATCACTCAGTGTTCTACCGCTGCAGCTTCAAGGGCTACCAAGACACGTTATATGTTTACTCCCAACGCCAATTCTACCGTGAATGTGACATATATGGAACCATAGACTTCATTTTCGGTGATGCCGTCACAGTCCTTCAAAACTGCAACATCTACGTGAGAAAACCAATGAGTAACCAGCAGAACACGGTCACAGCACAAGGAAGAACCGATCCTAATGAGAACACAGGAATTATCATCCATAATTGTCATATTACTTCATCTGGGGACTTGAAACCTGTTCAAAGCTCTTTCAGAACCTTTCTAGGTCGTCCATGGCAAAAGTACTCGAGAACAGTGGTCATGAAGAGTAACTTAGATGGGTTGATTAACCCTGCAGGTTGGTCACCGTGGAATGGAAACTTTGCTTTGAGCACTCTCTATTATGGTGAGTATATGAATACAGGACCTGGTGCTAACACAGAAAGGAGGGTAAAATTATGGCCAGGGTTTCGAGTAATCACAGATCCTACTGAGGCTGTGAAATTCTCCGTTGGAAATTTCTTAGCTGGAGACTCGTGGATTCCTGGTAGTGGCGTGCCGTTTGATGTAGGTTTGTGA 1587 0.4348 MDKLLFNCYIGYFLLCSLLVVHGKELSCNQTPYPQVCKHYIDITNTLSTLDASSSSFHDMALKVTMVQAIEAHKLVSIMELNNFKDKRAKSAWEDCLELYEDTIHHLNHSMRSNNLNDKLTWQSTSIANHQTCQNGFIEFNLPSHLNYFPSMLSNFSKLLSNSLSISKAVALSSSSLSSTKQIGGRKLLSDGFPHWLSASDRRLLQATEGTPKADIVVAQDGTGNYKTISEGVAVAAKLKGKGRVVLHVKAGVYRESVDIKKIVKNLMIIGDGIDATIVTGNHNAQDGSTTFRSATFAVSGEGFIAKDITFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYSQRQFYRECDIYGTIDFIFGDAVTVLQNCNIYVRKPMSNQQNTVTAQGRTDPNENTGIIIHNCHITSSGDLKPVQSSFRTFLGRPWQKYSRTVVMKSNLDGLINPAGWSPWNGNFALSTLYYGEYMNTGPGANTERRVKLWPGFRVITDPTEAVKFSVGNFLAGDSWIPGSGVPFDVGL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00066 528 SUPERFAMILY Pectin lyase-like 211 526 IPR011050 -
Gabi4436g00066 528 ProSitePatterns Pectinesterase signature 1. 241 260 IPR018040 -
Gabi4436g00066 528 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 169 IPR035513 -
Gabi4436g00066 528 CDD PMEI-like_3 26 171 - -
Gabi4436g00066 528 NCBIfam pectinesterase inhibitor domain 27 169 IPR006501 GO:0004857
Gabi4436g00066 528 PANTHER PECTINESTERASE 18 518 - -
Gabi4436g00066 528 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 170 IPR035513 -
Gabi4436g00066 528 Pfam Pectinesterase 215 514 IPR000070 GO:0030599|GO:0042545
Gabi4436g00066 528 Gene3D - 210 528 IPR012334 -
Gabi4436g00066 528 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Gabi4436g00066 528 Pfam Plant invertase/pectin methylesterase inhibitor 27 166 IPR006501 GO:0004857
Gabi4436g00066 528 FunFam Pectinesterase 25 170 - -
Gabi4436g00066 528 FunFam Pectinesterase 209 528 - -
Gabi4436g00066 528 SMART PMEI_2 21 166 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00066 Gabi-Chr4436 566722 569210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00066 27 528 Carbohydrate Esterase AT1G23200 54.253 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00066 - - gmx:100775898 845.884