Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00064 ATGGTTACCCATTTCCCCTTCCTCTCATACATACTCACCATTGTTTTCTTCTTAACAACTTTGCCACAATCCTACTCTCAAAAAAATGACTCCTACTCTATTTGCAGCCAATCATTCAGTTGTGGAACTCTCACAGACTTATCCTATCCTTTCTGGGGAGGGAACCGACCCCATTTTTGTGGCAGCGATGGGTTCAAGCTCACGTGCATGGATAACCAAACCACTTCAGTTCAAGTTGGCTCACAAAAATTCAATGTACTAAATATTAACCAAACGGCTAGTACCATGAGAATGGTGCGAACAGACCTTGTCTATGATAGCTGTTCTTCCAATTTTACCAACACTTCTCTGAGTGCCAGTCCCTTTAGTTTTCTCCCAACTGTTCAGAATGTCACTATATTCTACGAATGCCCTTCTGAGAATTCAATTGTGGGGAACACTTTTACGTGCCAGAATGATAGCAATAAACATGCTTTTTATGTGGTCAATGGAACTCAGCTTCAGCAGTTCCCAGGCCTTCTGAACTGTGGGGTTAGTGTTCGAGTGCAAGTTTCACGGAGTGTTGTTTGGGACTCTGAGGGTGGAGTTGGTGCGTTGAAGAAAGCGCTTGATCAAGGGTTTGATGTGCAGTATGATGCAAAGTGGTCTTCTCAGTGCACAGCATGCAAGGAATCTGGAGGAGCATGTGGAACGAATGAGAATGATTCGACTCAGTTTTCATGTTATTGCTTGGGTGGAACTCATGGTTCAGCGTGTCCTTCTCACAAAAGTCGAACGATGAACAGAGTGTTGAAGCTGGTTTTAGGTTTCGTAGCTACTGGAATTGGACTACCTCTTATTGCTGTCATCATATGCCGTAATAAAGCCATGCTGTGGAAGATTATATTAACACAGTTTGGGAAGATAAAAAGAAATGATCGAGACATAGAAGCCTTCCTTGCAAGTCAAGGTCCTCTGAGTTTAAAAAGATATAGTTTCTCTGATGTAAAGAAAATAACCGACTCCTTCAAAGTTAAACTGGGAGAAGGTGGTTATGGTTCTGTATACAAAGGAAAATTACTCGATGGTAGCTTTGTGGCTGTAAAGTTACTAAACGAGTCCAAAGGGAATGGCGAAGAATTCATCAATGAGGTTGCCAGCATAGGTAAAACATCCCATGTTAATGTTGTCACTCTTCTTGGATTTTGTCTTGAAGGAAACAGAAAAGCTCTTGTCTATGAATTCATGTCCAAAGGTTCCCTTGAAAAGTACATTCACAACAAGGCAACTGAAACTACTCCATCCTTGAGTTGGGATAACTTGTACCAGATTGCAATAGGGATAGCTCGAGGACTTGAGTACTTGCATAAAGGATGCAACACTAGGATTTTGCATTTTGACATTAAACCACATAATATCCTTCTGGATGAAACTTATAGCCCAAAGATATCAGATTTCGGGCTTGCTAAGCTCAGCACAAGGGATAATAGCATTGTTTCAATGTCAAATGCTAGAGGGACAGTTGGGTATGTAGCTCCCGAAGTGTGGAATAAAAGTTTTGGTGGTGTTTCACATAAATCTGATGTTTATAGCTATGGAATGATGCTGCTAGAAATGGTTGGAGGACAGAAGAACATTAATGTTGAAGCCAGTCGCTCGAGCGAGATATATTTTCCTCATTTGGTTATTTATAAGAAGCTTGAGCTGGGAAATGAATTAGGACTTGATGGGATAATGTCCACAGATGAAAATGAGATAGCTAAGAGAATGACTATGGTGGGTTTGTGGTGCATTCAGACAATTCCTTCTCACAGACCCACAATAAGTAGAGTGATTGACATGTTGGAAGGTAGCATGGATTCCCTGGAAATGCCACCAAAACCTGTTCTGTGTTCTCCTCCAAGATCAACAACAGAATTTTCCACTACATCAAATTCACTTAATAGTGTCTGA 1932 0.4105 MVTHFPFLSYILTIVFFLTTLPQSYSQKNDSYSICSQSFSCGTLTDLSYPFWGGNRPHFCGSDGFKLTCMDNQTTSVQVGSQKFNVLNINQTASTMRMVRTDLVYDSCSSNFTNTSLSASPFSFLPTVQNVTIFYECPSENSIVGNTFTCQNDSNKHAFYVVNGTQLQQFPGLLNCGVSVRVQVSRSVVWDSEGGVGALKKALDQGFDVQYDAKWSSQCTACKESGGACGTNENDSTQFSCYCLGGTHGSACPSHKSRTMNRVLKLVLGFVATGIGLPLIAVIICRNKAMLWKIILTQFGKIKRNDRDIEAFLASQGPLSLKRYSFSDVKKITDSFKVKLGEGGYGSVYKGKLLDGSFVAVKLLNESKGNGEEFINEVASIGKTSHVNVVTLLGFCLEGNRKALVYEFMSKGSLEKYIHNKATETTPSLSWDNLYQIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDETYSPKISDFGLAKLSTRDNSIVSMSNARGTVGYVAPEVWNKSFGGVSHKSDVYSYGMMLLEMVGGQKNINVEASRSSEIYFPHLVIYKKLELGNELGLDGIMSTDENEIAKRMTMVGLWCIQTIPSHRPTISRVIDMLEGSMDSLEMPPKPVLCSPPRSTTEFSTTSNSLNSV 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00064 643 Gene3D Transferase(Phosphotransferase) domain 1 409 618 - -
Gabi4436g00064 643 Pfam Wall-associated receptor kinase galacturonan-binding 35 100 IPR025287 GO:0030247
Gabi4436g00064 643 Pfam Wall-associated receptor kinase C-terminal 150 244 IPR032872 -
Gabi4436g00064 643 SUPERFAMILY Protein kinase-like (PK-like) 315 609 IPR011009 -
Gabi4436g00064 643 MobiDBLite consensus disorder prediction 627 643 - -
Gabi4436g00064 643 SMART serkin_6 334 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4436g00064 643 Gene3D Phosphorylase Kinase; domain 1 311 408 - -
Gabi4436g00064 643 FunFam serine/threonine-protein kinase PBS1-like 303 408 - -
Gabi4436g00064 643 MobiDBLite consensus disorder prediction 624 643 - -
Gabi4436g00064 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Gabi4436g00064 643 Pfam Protein kinase domain 337 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4436g00064 643 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Gabi4436g00064 643 PANTHER RUST RESISTANCE KINASE LR10-RELATED 298 629 IPR045874 GO:0004672
Gabi4436g00064 643 FunFam PR5-like receptor kinase 409 620 - -
Gabi4436g00064 643 ProSiteProfiles Protein kinase domain profile. 334 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00064 Gabi-Chr4436 536393 541709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00064 8 621 Receptor kinase-like Gene Family AT5G38260 41.429 1.16e-148 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi4436g00064 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00064 - - gmx:100816285 1059.67