Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00063 ATGATGTTCAAACTTGCATGTGCATGCTTTGTTTCTTCTCTGTTTCTCTTCTTCACCTATTCCTCTGGCAGCCACAACACTTCATCCTCAACAATTTGCCCCACTTACCGCTGCACCAATGGACCTAACATCAGTTACCCTTTTTGGCTAGCCCAAGGTTCCCCTCCTGATCAATATTGTGGTTACCAAGAACTTGGCCTTATTTGCTCTGACCATGGTAACCCCATTTTCTCTCCACCACCCGGATTATACTACTACGTAGAAGATATAGACTATGAAAAACATAGTCTTAAGCTCATTGATGTTGATACTGTAAACCAAACTTGTCCAAGGGCACTTCACAATGTTCCCTTGGGCAACCTACCACTTTCTCACTCACCTTTGAACTTAAACCTTAGCTTTTACTATAACTGCAGTCATTACCCTTCTTATGTACCTTCTATAAAGTGTCTGAGTTCCGGGGCAAACGAGTCTTTTGTGTTTGGCATGAGGAATGAGACTAAAGGTTTTGACTGGTCTGAGAATTGTCAGGAAAACGTTGTGGTGACAGTGATGAAGGATCAGATTACAAGTGATGGCTTGATGAATGAGTTTGCTGGGGCCATGAATGAAGGGTTCGTGCTTGATTGGCAAACAGCTTCAAATTGTGCTGAGTGCGAGGCCAGTGATGGACTTTGTGGATACAGTAACACCAGGAAGGAGTTGCTGTGCTTTTGCAAAGATGGCAGTACAAGAAGCAATAAATGTGAAGGGGGAAGCAGCACCCGTTTCTCAAGACTAAATATAGGTTTAATAGCTGGAGGAATTGGAGCACTAATGATATGCATCATACTTTGCAGTTTTAGACGTAAATTATCACCAGTTGTGTCAAAAATTTGGAAGACCAAGAAGATTGATCTAGATATTGAGGCCTTTATCAGAGATAATGGACCTCCAGCCATAAAAAGATATTCGTATTCAGAGATCAAGAAAATGACCAATTCTTTTGATTCCAAACTGGGACAAGGTGGTTATGGCCAAGTATATAAAGGAAATCTAAACAATAATTGTCCTGTGGCTGTGAAGGTACTGAATGCTTCCAAAGGGAATGGGGAAGAATTTATCAATGAGGTTGCGAGCATCAGCAGAACATCCCATGTTAATATTGTTAATCTCCTTGGTTTTTGTCTTGAAGGCCAAAAGAAAGCTCTCATATATGAATTTATGCCCAATGGATCACTTGAAAAGTTTATACACAAAGATTTTGAAACCAATCCACCTTTGAGTTGGGAAAGATTACACCAGATTGCAGAAGGGATAGCTAAAGGACTAGAGTACTTGCATAGGGGTTGCAACACTCGGATATTACATTTTGACATAAAACCAACCAACATCCTTTTAGATGAAAACTTGTGCCCCAAAATCTCAGATTTTGGGCTGGCTAAGCTCTGCTCAAAAACACATAGTATCATCTCTATGCTTGATGCTAGAGGGACAATTGGGTATATAGCTCCCGAAATATGGAACAGAAACTTTGGAGGAGTGTCACATAAGTCTGATGTCTATAGTTATGGAATGATGATTTTGGAAATGGTAGGGGGAAGGCAAAACATCAGTACTGAAGCATGTAATTCCAGTGACACATATTTTCCTCATTGGATATATAAGCATGTTGAGGTTGGTAGCAATTTAACATGGCATGGTGGCATGACCATAGAGGAAAATGAAATTTGTAAGAAAATGATTTTAGTAGGATTGTGGTGCATACAGACAATCCCATCTGACAGGCCTCCAATGAGTAGGGTGATTGAAATGTTAGAAGGAAGCTTAGAACAGTTGCAAATTCCACCAAAGCCGTTCATGTTTTCTCCTACAACAACCCAAGTGGAACCTTGCACCACTAGTAGCTGTGATTGA 1896 0.4051 MMFKLACACFVSSLFLFFTYSSGSHNTSSSTICPTYRCTNGPNISYPFWLAQGSPPDQYCGYQELGLICSDHGNPIFSPPPGLYYYVEDIDYEKHSLKLIDVDTVNQTCPRALHNVPLGNLPLSHSPLNLNLSFYYNCSHYPSYVPSIKCLSSGANESFVFGMRNETKGFDWSENCQENVVVTVMKDQITSDGLMNEFAGAMNEGFVLDWQTASNCAECEASDGLCGYSNTRKELLCFCKDGSTRSNKCEGGSSTRFSRLNIGLIAGGIGALMICIILCSFRRKLSPVVSKIWKTKKIDLDIEAFIRDNGPPAIKRYSYSEIKKMTNSFDSKLGQGGYGQVYKGNLNNNCPVAVKVLNASKGNGEEFINEVASISRTSHVNIVNLLGFCLEGQKKALIYEFMPNGSLEKFIHKDFETNPPLSWERLHQIAEGIAKGLEYLHRGCNTRILHFDIKPTNILLDENLCPKISDFGLAKLCSKTHSIISMLDARGTIGYIAPEIWNRNFGGVSHKSDVYSYGMMILEMVGGRQNISTEACNSSDTYFPHWIYKHVEVGSNLTWHGGMTIEENEICKKMILVGLWCIQTIPSDRPPMSRVIEMLEGSLEQLQIPPKPFMFSPTTTQVEPCTTSSCD 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00063 631 SMART serkin_6 327 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4436g00063 631 Gene3D Phosphorylase Kinase; domain 1 306 401 - -
Gabi4436g00063 631 Pfam Protein tyrosine and serine/threonine kinase 329 599 IPR001245 GO:0004672|GO:0006468
Gabi4436g00063 631 PANTHER RUST RESISTANCE KINASE LR10-RELATED 297 620 IPR045874 GO:0004672
Gabi4436g00063 631 ProSiteProfiles Protein kinase domain profile. 327 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4436g00063 631 FunFam S-receptor-like serine/threonine-protein kinase 303 401 - -
Gabi4436g00063 631 SUPERFAMILY Protein kinase-like (PK-like) 311 600 IPR011009 -
Gabi4436g00063 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Gabi4436g00063 631 FunFam PR5-like receptor kinase 402 611 - -
Gabi4436g00063 631 CDD STKc_IRAK 333 601 - -
Gabi4436g00063 631 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Gabi4436g00063 631 Pfam Wall-associated receptor kinase galacturonan-binding 33 101 IPR025287 GO:0030247
Gabi4436g00063 631 Pfam Wall-associated receptor kinase C-terminal 154 242 IPR032872 -
Gabi4436g00063 631 Gene3D Transferase(Phosphotransferase) domain 1 402 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00063 Gabi-Chr4436 531239 534616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00063 34 612 Receptor kinase-like Gene Family AT5G38260 41.930 8.87e-148 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi4436g00063 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00063 - - gmx:100781977 971.459