Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00047 ATGCCTACTCCAAAGAGCATCAACAATTCTAGTGAAGAAGATTCTGAACTCAGAAGAGGTCCTTGGACTCTCGAAGAGGATAATTTGCTTACCCAATATATTGCTAATCATGGGGAAGGGCGATGGAATTTTCTGGCTAAACGTTCAGGATTGAAGAGAACAGGAAAAAGTTGCAGATTAAGGTGGCTAAATTATTTGAATCCTGATGTAAAGCGAGGAAATTTAACCCTAGAAGAGCAGCTTCTAATTCTTGAACTCCACTTAAAGTGGGGAAACAGGTGGTCAAAAATTGCACAACTTTTGCCAGGCCGGACAGACAATGAAATCAAGAACTATTGGAGAACTCGGATTCAGAAACAAGCAAGACATTTGAAAATTGACACAGATAGCACAGAATTTCAAGAACTAGTTAGGCGTTTCTGGATGCCAAGGTTGCTTCAGAAAGCAAAAGAATCATCTTCTTCAGCCATGTCAATCCAAGGCCAGGCAATTCCATTGCCTCTTGATAGTGTTTCTCATTATTCAACTGTGGGGACAATACCAACACAAATCCCTTGGCAGGGACCTTGTATGAATGAAGCAGTTCCCAATTATTTGGATCAACATGAGCATAACTCAGACTCTGAGCACACCAATGGTTCATGCATCTCCTTTTCTGAGTCAGCAAATATCCCAAAAGTTCCTCAGCATATGGGATACACCACCACTCAATTTCATGCATTAGATAACAATGACTTTGGCACCTTCACATATGATGGCTACCATGTAAATAACAGTGGTTATGAGATGGACACCTTTGAAATGGAATCTGCAAGGGTAGCTGAGGATGTGCAATACCCAGTTGGTGATTGCCAAATGGCAGAAAGCAATTTGGTAAACAATGATTTTGCATGTAGCATGTGGAGCATGGATGAATTGTGGAAATTTAGTAACTTACAAAAATAA 945 0.4032 MPTPKSINNSSEEDSELRRGPWTLEEDNLLTQYIANHGEGRWNFLAKRSGLKRTGKSCRLRWLNYLNPDVKRGNLTLEEQLLILELHLKWGNRWSKIAQLLPGRTDNEIKNYWRTRIQKQARHLKIDTDSTEFQELVRRFWMPRLLQKAKESSSSAMSIQGQAIPLPLDSVSHYSTVGTIPTQIPWQGPCMNEAVPNYLDQHEHNSDSEHTNGSCISFSESANIPKVPQHMGYTTTQFHALDNNDFGTFTYDGYHVNNSGYEMDTFEMESARVAEDVQYPVGDCQMAESNLVNNDFACSMWSMDELWKFSNLQK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00047 314 Gene3D - 76 118 - -
Gabi4436g00047 314 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Gabi4436g00047 314 FunFam Myb transcription factor 19 71 - -
Gabi4436g00047 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 70 IPR017930 -
Gabi4436g00047 314 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Gabi4436g00047 314 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Gabi4436g00047 314 SMART sant 18 68 IPR001005 -
Gabi4436g00047 314 SMART sant 71 119 IPR001005 -
Gabi4436g00047 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 121 IPR017930 -
Gabi4436g00047 314 Gene3D - 10 71 - -
Gabi4436g00047 314 CDD SANT 21 66 IPR001005 -
Gabi4436g00047 314 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Gabi4436g00047 314 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 13 201 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi4436g00047 314 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00047 Gabi-Chr4436 436853 438118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00047 14 309 MYB Transcription Factor Family AT1G68320 45.161 9.61e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4436g00047 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00047 K09422 - gmx:778042 530.791