Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00041 ATGGCAGAAAACCTACCTCCAGGGTTCAGGTTCCATCCTACAGACGAAGAGCTCATCACATATTATTTATTAAGGAAAGTGTCTGATACCAGCTTCACTTCCAAAGCTGTAGCAGTTGTTGATCTCAATAAGTCTGAACCTTGGGACCTCCCAGGTAAGGCTTCCATGGGCGAGAAGGAATGGTATTTCTACAGCTTGAAAGATCGAAAGTATCCAACTGGGCTTCGAACCAACCGAGCCACCGAATCAGGCTATTGGAAAACCACAGGAAAAGACAAAGAAATTTTTGGTGCTGGAGTTTTGATTGGAATGAAAAAAACTTTAGTCTTTTACATGGGCAGAGCGCCGAGGGGTGAGAAAAGTAACTGGGTTATGCACGAATATAGGCTACAAAACAAGCATCCATTTAGATCTTCAAAGGATGAATGGGTGGTTTGCAGGGTCTTTCAAAAGAGCTCAGCACCGAAAAAACCACAACACACATCATCCTCCCAACAATCTCAAGAGTCCCCTTGTAATACAACCTCAATGGTCAATGACTTTGGGGATCTTGAGCTGCCAAATCTAAATAGTATCACAAATTCATCAAATGGCTTCACTAGCATCTCATCAGGACAAACTTACAATGGTGTTGGTCCCAGTAATGTTAACACAAATATGAACTTGACCATGAATTGGCCAGCTATAAGTGAGGTTCCCTCTCTTCCATCTCTCCCATGGCCTTCTGGGTTGCTGAATCCAAATCTTTCTGTGAATTCTTTGCTTCTCAAGGCATTACAGCTTAGGAGCACTTATCAACAAAGAGAAGCTGCAGCTACTGATCATTTAGCAACATACATTCCTCAAGGATTTTCTTACCTTGGAACTGACTTGACCTCCAATCTCAATGCTTCTTCTTCAAAAGTTTTAGAAAGTATGCCCCAGCAGCAGCAGCAGGAGGAGCAACCATTCAATATGGACTCCATTTGGTGA 972 0.427 MAENLPPGFRFHPTDEELITYYLLRKVSDTSFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFYSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGAGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLQNKHPFRSSKDEWVVCRVFQKSSAPKKPQHTSSSQQSQESPCNTTSMVNDFGDLELPNLNSITNSSNGFTSISSGQTYNGVGPSNVNTNMNLTMNWPAISEVPSLPSLPWPSGLLNPNLSVNSLLLKALQLRSTYQQREAAATDHLATYIPQGFSYLGTDLTSNLNASSSKVLESMPQQQQQEEQPFNMDSIW 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00041 323 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Gabi4436g00041 323 FunFam NAC domain-containing protein 100-like 14 155 - -
Gabi4436g00041 323 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Gabi4436g00041 323 MobiDBLite consensus disorder prediction 154 177 - -
Gabi4436g00041 323 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Gabi4436g00041 323 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 227 - -
Gabi4436g00041 323 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Gabi4436g00041 323 MobiDBLite consensus disorder prediction 299 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00041 Gabi-Chr4436 381751 384389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00041 1 323 NAC Transcription Factor Family AT3G18400 56.535 5.28e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4436g00041 NAM 8.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00041 - - gmx:100787111 472.241