Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00038 ATGATCACAGACGTGAAAGCTGCAGGTGCAGGTGCCTTGGGTGCCAAGACAGCACGAGCGTGTGATAGCTGCCTGCGCAGGAGAGCGCGGTGGTTTTGTGGAGCTGATGATGCTTTCCTCTGCCATGGCTGCGACACTTTGGTTCACTCTGCAAATCAGTTAGCCAGCAGACATGAAAGGGTTCGTCTTCAAACTGCGTCCTCTGAAAAGGTAACCACTACACACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCACAACAAGCACTTGGCTCTGCAACAACGTCTCAAAGACCATGTGTTCTTCAACAACTCTAGTTTTCTTCCCGTTGTGCCAGAGCTCGGAGGTGAAGAATCACCGGTTGATGATGAGACTGAGGATCAGCTCCTTCTTCGTGTGCCTGTGTTCGATCCATTCGATGTTGAACCTTGCAATATATATAACCAAAGGAAAAAAGATGCTGGTTATGAAGAAGAAGAAGACTGTGACTTGGACAATTTCTCTGAGTTTCTCCCATCAGACATGGATCTTGCTGAGTTTGCTGCTGATGTTGAAAGCCTACTTAGGGGTGGGTTTGATTATAAAGAAGAAGATGAAACAGATAAATATGCCAAAAGTTCAATGGTTAAGGTTAAGGATGAAGAACTTGATGCTGATACGGGTTTTGATTTGGAGTCAGTTCTTGACATGACAAGCAAGGATGCCTTTCATTGGAACATTGACTCTGTGCTGTCACCGGCATCAACTGCAAAGGAAGAGGAGGAAAAGGTGGTGGTGGTGCCTGTGATGGCAAGTAATACTAGTGTGAGTAAAGAGGGAACAAAGAGAGACATATTTTTGAGACTAAACTATGAGGAGGTTATTACTGCTTGGGCCAGCCAAGGTTCTCCATGGACAACAGGAAAACCACCTAAGTTCAACTCTGATGACTTCTGGTCAAACTGCTTGGGTTCGAGTGATGCAGATGGGGAAGTAAGAAGCTTAAGGGGGCACCTAGTAGGGAATGGAGATGGAGGTAGAGAAGCAAGAGTATCGAGGTACAGAGAGAAGAGAAGGACTCGTTTATTTGCAAAGAAGATTAGGTACGAAGTAAGGAAGTTGAACGCTGAGAAGAGACCTAGAATGAAAGGTCGTTTTGTCAAGAGGACATGCTTTGTTGGAGCCACTGACTTTCCAGCTTACCACTGA 1200 0.4608 MITDVKAAGAGALGAKTARACDSCLRRRARWFCGADDAFLCHGCDTLVHSANQLASRHERVRLQTASSEKVTTTHAWHSGFTRKARTPRHNKHLALQQRLKDHVFFNNSSFLPVVPELGGEESPVDDETEDQLLLRVPVFDPFDVEPCNIYNQRKKDAGYEEEEDCDLDNFSEFLPSDMDLAEFAADVESLLRGGFDYKEEDETDKYAKSSMVKVKDEELDADTGFDLESVLDMTSKDAFHWNIDSVLSPASTAKEEEEKVVVVPVMASNTSVSKEGTKRDIFLRLNYEEVITAWASQGSPWTTGKPPKFNSDDFWSNCLGSSDADGEVRSLRGHLVGNGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGATDFPAYH 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00038 399 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 12 387 - -
Gabi4436g00038 399 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Gabi4436g00038 399 ProSiteProfiles CCT domain profile. 344 386 IPR010402 GO:0005515
Gabi4436g00038 399 CDD Bbox1_BBX-like 20 63 - -
Gabi4436g00038 399 Pfam B-box zinc finger 18 61 IPR000315 GO:0008270
Gabi4436g00038 399 SMART bboxneu5 16 63 IPR000315 GO:0008270
Gabi4436g00038 399 Pfam CCT motif 344 386 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00038 Gabi-Chr4436 328851 330651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00038 10 386 C2C2-CO-like Transcription Factor Family AT1G25440 42.166 1.56e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gabi4436g00038 zf-B_box 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00038 - - adu:107478728 488.034