Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00008 ATGGCAAGTCGACTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTTACACCGAATAAAAGATGTATTAACTGTAACAGCCTGGGAACACAATATGTTTGCACAAATTTCTGGACATTTGTTTGCACAAACTGTAGTGGAATACACCGGGAATTCACACATCGGGTTAAATCAATTTCAATGGCTAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAACGAGGAAATCAGCATGCCAAAGAAATTTATTTTAAAGAATGGGATCCACAACGTCATTCTTTACCTGATAGCAGTAATGTTGACAGGCTTCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCACTGGTGAGAAGACCTTTGACAAACCTCCAAGAGTACAGGTGGGTGACAAGGATGATTTCTATGAAAACAAGAGGACTGAGACATATCAGGGAGGACCTAAAAGCCCTCCGTATGACGACGCATATCAACGTCGTTACAGTGACAGGTCTAGTCCTGGTGAAAAAAGCCCTGGATATGATCAAGAAAATAGGCAATATGGTGAATACAAGAGGAGCCCTGGTCGTCCTCCAATAATCAATGATTGGCGTCGTGAAGATAGATTTGTGGATGGAAGGAAATATGAAGATCGTAGAATATCTGATGGAGTTAATAAGGTGGAAAGCCAATCTCCTGAGCGAGCCAAAGATCTTGATTCTTCAAGCTTACCTGTGGTCCGACCTGTTAGAGATATTTTGGGAGAAAATGTTGTACCACTTCGAATCAGTGAACCCCCCAAAACAAACAGTGGAAGGGCTGCTGATGGGTCAGCAATCACACAGAGAACTACATCTTCCAGTAGCTTGGCATCCAGCAATGGAACCCCAGCAGAAGTTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCACCTGTTGCACCTGCAATTCCTCAAGCCCAACAAACTACTGTGGCTCAACTTGTTGTGATGCCAGCAAATTCCGGTGATAATAATTGGGCCTCTTTTGATGTTGCTCTTGATGCAAAAACATCTCAGGGTCCTTTAAATGTAAATCCACTAGAATCTGTGTTGTCCCAATTGTTAGTACCAGAACCTTTACCTGCTCATGTTTCTGGAGCCCAAGGGCCTGTGACAGGATCAGCTTTTACTGCTACTGCTGCTGGAGCTCCAACTATTAGCAGCTTCTCAACATTCCCAGCCAGTGATGCTTCAGTAACATCTTCTGGATTAACAATGGCTTCACCTCTCAGTAATGCAGGACAGTGGACCAGTTTGCAGTATCAGCAACCTTTGTTCACGGCTACTGTTAGTCAGCCTACTATTCAACAATCTACACGTCCAGTAGGTGGAGCTTCGAATAATCAGCCCTGGAATATAACTTCTGTACCCGCGGTACAGGGGCATCCAAGCACACAAATGCCACATGCATCCCACCATGTTGCAACACCTGCCAATGAGGCTAAATACAGTGTTGTTTCACAACCTTCTAGTGTAGACATGAATTCGAGTGGAAGAAATGAACTTCCTGAGGATCTATTCACTGTAAAATTTTCATCCTTCCCTGCTCCAGGTTGGCAAATGAGACAACCACCTGGCATGGGTATCTCAATTCAATATAATAATGTGGCGCCCATGCCAAATTTTCCGCAACCATCACAATCAACTAATCCATTTGATGTCAGCAATGAACCAATTCCAGTTCAAGCCCCAACTTTTCCTTCCATGTCATCTTTGCAAGGTGCTCTGCCTAGGTTAACACCTTCAGCCACAATGCATCCTTCAAACATGGCTAATCTATCTCTTGCCTGGAATCCATCCTCATCATCATCATATGTACCTGTTCTGCCTCCACAAGCACAAACTCTTGCATCAGCAATGGGACCAGGGGCATACATGGGGCTGCAAATGCCAACTAACATGCCCATGCCAAGGCATCAAGGAATCGGGGATTTTGGTACTGAGGGAGCTGCTTTTGGCTTCTCAAATCCAGATCAGCAGCTGACTGGTAAATTGTCAACCCGTGTCACCCCAAACCCCTTCCCCGCAGGAGGGAACCCATTCGGATGA 2109 0.4414 MASRLKEDEKNERIIRGLLKLTPNKRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQERGNQHAKEIYFKEWDPQRHSLPDSSNVDRLRDFIKHVYVDRRFTGEKTFDKPPRVQVGDKDDFYENKRTETYQGGPKSPPYDDAYQRRYSDRSSPGEKSPGYDQENRQYGEYKRSPGRPPIINDWRREDRFVDGRKYEDRRISDGVNKVESQSPERAKDLDSSSLPVVRPVRDILGENVVPLRISEPPKTNSGRAADGSAITQRTTSSSSLASSNGTPAEVKLETTKSLIDFDDDPEPPVAPAIPQAQQTTVAQLVVMPANSGDNNWASFDVALDAKTSQGPLNVNPLESVLSQLLVPEPLPAHVSGAQGPVTGSAFTATAAGAPTISSFSTFPASDASVTSSGLTMASPLSNAGQWTSLQYQQPLFTATVSQPTIQQSTRPVGGASNNQPWNITSVPAVQGHPSTQMPHASHHVATPANEAKYSVVSQPSSVDMNSSGRNELPEDLFTVKFSSFPAPGWQMRQPPGMGISIQYNNVAPMPNFPQPSQSTNPFDVSNEPIPVQAPTFPSMSSLQGALPRLTPSATMHPSNMANLSLAWNPSSSSSYVPVLPPQAQTLASAMGPGAYMGLQMPTNMPMPRHQGIGDFGTEGAAFGFSNPDQQLTGKLSTRVTPNPFPAGGNPFG 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00008 702 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Gabi4436g00008 702 MobiDBLite consensus disorder prediction 222 243 - -
Gabi4436g00008 702 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Gabi4436g00008 702 MobiDBLite consensus disorder prediction 222 236 - -
Gabi4436g00008 702 MobiDBLite consensus disorder prediction 261 299 - -
Gabi4436g00008 702 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Gabi4436g00008 702 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Gabi4436g00008 702 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Gabi4436g00008 702 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Gabi4436g00008 702 MobiDBLite consensus disorder prediction 127 147 - -
Gabi4436g00008 702 MobiDBLite consensus disorder prediction 680 702 - -
Gabi4436g00008 702 MobiDBLite consensus disorder prediction 274 299 - -
Gabi4436g00008 702 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Gabi4436g00008 702 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Gabi4436g00008 702 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Gabi4436g00008 702 CDD ArfGap_AGFG 12 122 - -
Gabi4436g00008 702 MobiDBLite consensus disorder prediction 127 205 - -
Gabi4436g00008 702 PANTHER ARFGAP/RECO-RELATED 1 702 IPR044820 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00008 Gabi-Chr4436 64992 77077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00008 12 122 C2H2 Transcription Factor Family AT4G21160 27.586 1.64e-09 58.2