Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00007 ATGGCAAGTCGACTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTTACACCGAATAAAAGATGTATTAACTGTAACAGCCTGGGAACACAATATGTTTGCACAAATTTCTGGACATTTGTTTGCACAAACTGTAGTGGAATACACCGGGAATTCACACATCGGGTTAAATCAATTTCAATGGCTAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAACGAGGAAATCAGCATGCCAAAGAAATTTATTTTAAAGAATGGGATCCACAACGTCATTCTTTACCTGATAGCAGTAATGTTGACAGGCTTCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCACTGGTGAGAAGACCTTTGACAAACCTCCAAGAGTACAGGGTGACAAGGATGATTTCTATGAAAACAAGAGGACTGAGACATATCAGGGAGGACCTAAAAGCCCTCCGTATGACGACGCATATCAACGTCGTTACAGTGACAGGTCTAGTCCTGGTGAAAAAAGCCCTGGATATGATCAAGAAAATAGGCAATATGGTGAATACAAGAGGAGCCCTGGTCGTCCTCCAATAATCAATGATTGGCGTCGTGAAGATAGATTTGTGGATGGAAGGAAATATGAAGATCGTAGAATATCTGATGGAGTTAATAAGGTGGAAAGCCAATCTCCTGAGCGAGCCAAAGATCTTGATTCTTCAAGCTTACCTGTGGTCCGACCTGTTAGAGATATTTTGGGAGAAAATGTTGTACCACTTCGAATCAGTGAACCCCCCAAAACAAACAGTGGAAGGGCTGCTGATGGGTCAGCAATCACACAGAGAACTACATCTTCCAGTAGCTTGGCATCCAGCAATGGAACCCCAGCAGAAGTTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCACCTGTTGCACCTGCAATTCCTCAAGCCCAACAAACTACTGTGGCTCAACTTGTTGTGATGCCAGCAAATTCCGGTGATAATAATTGGGCCTCTTTTGATGTTGCTCTTGATGCAAAAACATCTCAGGGTCCTTTAAATGTAAATCCACTAGAATCTGTGTTGTCCCAATTGTTAGTACCAGAACCTTTACCTGCTCATGTTTCTGGAGCCCAAGGGCCTGTGACAGGATCAGCTTTTACTGCTACTGCTGCTGGAGCTCCAACTATTAGCAGCTTCTCAACATTCCCAGCCAGTGATGCTTCAGTAACATCTTCTGGATTAACAATGGCTTCACCTCTCAGTAATGCAGGACAGTGGACCAGTTTGCAGTATCAGCAACCTTTGTTCACGGCTACTGTTAGTCAGCCTACTATTCAACAATCTACACGTCCAGTAGGTGGAGCTTCGAATAATCAGCCCTGGAATATAACTTCTGTACCCGCGGTACAGGGGCATCCAAGCACACAAATGCCACATGCATCCCACCATGTTGCAACACCTGCCAATGAGGCTAAATACAGTGTTGTTTCACAACCTTCTAGTGTAGACATGAATTCGAGTGGAAGAAATGAACTTCCTGAGGATCTATTCACTGTAAAATTTTCATCCTTCCCTGCTCCAGGTTGGCAAATGAGACAACCACCTGGCATGGGTATCTCAATTCAATATAATAATGTGGCGCCCATGCCAAATTTTCCGCAACCATCACAATCAACTAATCCATTTGATGTCAGCAATGAACCAATTCCAGTTCAAGCCCCAACTTTTCCTTCCATGTCATCTTTGCAAGGTGCTCTGCCTAGGTTAACACCTTCAGCCACAATGCATCCTTCAAACATGGCTAATCTATCTCTTGCCTGGAATCCATCCTCATCATCATCATATGTACCTGTTCTGCCTCCACAAGCACAAACTCTTGCATCAGCAATGGGACCAGGGGCATACATGGGGCTGCAAATGCCAACTAACATGCCCATGCCAAGGCATCAAGGAATCGGGGATTTTGGTACTGAGGGAGCTGCTTTTGGCTTCTCAAATCCAGATCAGCAGCTGACTGGTAAATTGTCAACCCGTGTCACCCCAAACCCCTTCCCCGCAGGAGGGAACCCATTCGGATGA 2106 0.4411 MASRLKEDEKNERIIRGLLKLTPNKRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQERGNQHAKEIYFKEWDPQRHSLPDSSNVDRLRDFIKHVYVDRRFTGEKTFDKPPRVQGDKDDFYENKRTETYQGGPKSPPYDDAYQRRYSDRSSPGEKSPGYDQENRQYGEYKRSPGRPPIINDWRREDRFVDGRKYEDRRISDGVNKVESQSPERAKDLDSSSLPVVRPVRDILGENVVPLRISEPPKTNSGRAADGSAITQRTTSSSSLASSNGTPAEVKLETTKSLIDFDDDPEPPVAPAIPQAQQTTVAQLVVMPANSGDNNWASFDVALDAKTSQGPLNVNPLESVLSQLLVPEPLPAHVSGAQGPVTGSAFTATAAGAPTISSFSTFPASDASVTSSGLTMASPLSNAGQWTSLQYQQPLFTATVSQPTIQQSTRPVGGASNNQPWNITSVPAVQGHPSTQMPHASHHVATPANEAKYSVVSQPSSVDMNSSGRNELPEDLFTVKFSSFPAPGWQMRQPPGMGISIQYNNVAPMPNFPQPSQSTNPFDVSNEPIPVQAPTFPSMSSLQGALPRLTPSATMHPSNMANLSLAWNPSSSSSYVPVLPPQAQTLASAMGPGAYMGLQMPTNMPMPRHQGIGDFGTEGAAFGFSNPDQQLTGKLSTRVTPNPFPAGGNPFG 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00007 701 MobiDBLite consensus disorder prediction 126 204 - -
Gabi4436g00007 701 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Gabi4436g00007 701 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Gabi4436g00007 701 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Gabi4436g00007 701 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Gabi4436g00007 701 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Gabi4436g00007 701 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Gabi4436g00007 701 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Gabi4436g00007 701 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Gabi4436g00007 701 MobiDBLite consensus disorder prediction 679 701 - -
Gabi4436g00007 701 MobiDBLite consensus disorder prediction 221 242 - -
Gabi4436g00007 701 MobiDBLite consensus disorder prediction 221 235 - -
Gabi4436g00007 701 MobiDBLite consensus disorder prediction 260 298 - -
Gabi4436g00007 701 MobiDBLite consensus disorder prediction 126 146 - -
Gabi4436g00007 701 CDD ArfGap_AGFG 12 122 - -
Gabi4436g00007 701 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Gabi4436g00007 701 PANTHER ARFGAP/RECO-RELATED 1 701 IPR044820 GO:0005096
Gabi4436g00007 701 MobiDBLite consensus disorder prediction 273 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00007 Gabi-Chr4436 64992 77077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00007 12 122 C2H2 Transcription Factor Family AT4G21160 27.586 1.64e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00007 - - gmx:100815114 1045.42